Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1308 ATGGATCCTGTTATATCTGTTAGCCGGAAGCCTCTCAAGGTCCACCTAGTCGTCTCCGCCGACTCGCCCGAGTTCGCTCTTTTGACCCAGTCCTTGACTCGGACATCACTCGTCGGACTCGACGCCGAGTGGAAGCCCGTTCGAACTCACCAAACGTCTTTCCCCGCCGTTTCGCTCCTCCAAATTGCCTGCCAACTCAACGCAGAACGCGGCAATGACTCGGACGAGTCGGGAGAGTCGGTGGTTTTTCTGCTCGATCTGTTCTCCGTTCCTTTACCTGCACTGTGGGAATCGCTTAGGGATATGCTTGCCTCTCCTGATATCTTGAAGctgggatttaggtttaagcAGGATTTAATATACTTGTCCTCCACTTTCTGTTCCCAAGGCTGCGATCCTGGTTTTGATAAGGTTGATCCATATTTGGATATTACAAACGTATACAATCACCTACAGCATAAGAAACATGGAAGGAGTACGTCGAAGCAAACTAAAAGTTTATCAACTATATGTGGAGAAGTATTGGGTTTTTCTCTCTCAAAGGAACTTCAATGTAGTGATTGGTCACAACGTCCTCTTACAGAAGAACAGATAACATATGCGGCTATGGATGCTCACTGCTTGCTTGAAATATTTAATGTCTTCCAGGAAAAGATTGTCAAAGAAGGAAACTCTGTTGGCAATACAACTGATTTGTCTAATCTTGGTGAAAATCTTGGGTTGAAAGAGGTTTTCAGGGAGTACAACATGAGTAACAAAATCCTAACCACAAAATTTTGTGAAGCATCAGACATTGTCCAAGCTACTGCTTATTCTGATGTTACTCAGATCATAGCTATATCAGGGGGAATGATCCCAAAATTATCTTGTAGAAGTACTATGCCAATGGATgaaattttgttgaaaattgTGAAAAAATATGGTGAAAAGATTCTGCTTAAAGAGTCTGACAAGAGGCCAAAAACCtcaaagaaaaaagtaaagaagcGGTCATCAATTAATGGGATTTGCAAAGAAAAGCAATTAGAGAAGTATGATGAGTGGCAGGGGACCTCGCCTTGGGATCCATCAGTGGGAGGAGATGGATGTCCAAAGTTTCTCTGTGATGTCATGGTTGAAGGCTTGGCAAAACATTTACGATGTGTTGGGATAGATGCAGCAATGCCATATTCTAAGAAGCCTGAACCGAGGGAGTTGATAGAGCAAGCACAAAAGGAGAAACGAGTCCTGCTCACACGAGATGCCAAGTTGCTAAGACATGAGTATCttctaaaaaatcaaatatataaagtgaagagtcttttaaaaaatgaacaGCTACTTGAGGTTATTGAAACTTTTCAACTGAAAATTAGCGAGGATCAACTGATGTCAAGATGCACAAAATGTAATGGGAGATTCATTCAGAAACCACTGTCAACTGAAGAGGCTATTCAAGCTGCAAAGGGTTTTCAAAGAATCCCTTCTTGCTTATTTAACaagaatttagagttttggcaGTGCATGGACTGTCACCAACTTTACTGGGAGGGAACCCAATACCATAATGCAGTACAGAAGTTCATCGACGTTTGCAAGTTGGGTGACtaa 1590 0.3994 MDPVISVSRKPLKVHLVVSADSPEFALLTQSLTRTSLVGLDAEWKPVRTHQTSFPAVSLLQIACQLNAERGNDSDESGESVVFLLDLFSVPLPALWESLRDMLASPDILKLGFRFKQDLIYLSSTFCSQGCDPGFDKVDPYLDITNVYNHLQHKKHGRSTSKQTKSLSTICGEVLGFSLSKELQCSDWSQRPLTEEQITYAAMDAHCLLEIFNVFQEKIVKEGNSVGNTTDLSNLGENLGLKEVFREYNMSNKILTTKFCEASDIVQATAYSDVTQIIAISGGMIPKLSCRSTMPMDEILLKIVKKYGEKILLKESDKRPKTSKKKVKKRSSINGICKEKQLEKYDEWQGTSPWDPSVGGDGCPKFLCDVMVEGLAKHLRCVGIDAAMPYSKKPEPRELIEQAQKEKRVLLTRDAKLLRHEYLLKNQIYKVKSLLKNEQLLEVIETFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAIQAAKGFQRIPSCLFNKNLEFWQCMDCHQLYWEGTQYHNAVQKFIDVCKLGD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1308 529 Pfam Mut7-C RNAse domain 364 520 IPR002782 -
Sto5g1308 529 Gene3D - 7 224 IPR036397 GO:0003676
Sto5g1308 529 SMART 35exoneu6 14 220 IPR002562 GO:0003676|GO:0006139|GO:0008408
Sto5g1308 529 SUPERFAMILY Ribonuclease H-like 15 223 IPR012337 -
Sto5g1308 529 CDD mut-7_like_exo 14 217 IPR037432 GO:0008408
Sto5g1308 529 PANTHER 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN 7 526 - -
Sto5g1308 529 Pfam 3'-5' exonuclease 23 219 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1308 Sto-Chr5 8923858 8930626 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1308 K09122 - qsu:112008847 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1308 5 8923858 8930626 Sto5g1308 5 8923858 8930626 ECH