Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03920 ATGGCCAACATTTCAATTTCACTCCCGCGAACTGGTTTGTCCATACGAAACATCTCAACCAAACGCCCATGTTTCACCATTTCTGCTTCACCTCTCAGACTCACTTGCTCTCTTGTAGATGGATCTGATAATAATAAAGCAAAGTTACTTAATTTCAACAGAATCAAGGGTGTTGCTTGTGGTATTCTTGCAGCTTACACTCTTACTTCTGGTTCATTTCCTGTTACTGCTGCCACTCAGAGACTGCCGCCATTGTCAACTGAGCCCGATCGCTGCAAGCGTGCATTTGTTGGCAACACAATTGGTCAGGCGAATGGTGTGTATGACAAACCATTAGATCTCCGGAAATGTGATTTCACAAATGAAAAATCCAACCTGAAGGGGAAGACCCTGTCTGCAACACTAATGTCAGAAGCCAAGTTTGATGGTGCTGACATGACAGAAATTGTAATGTCAAAGGCTTATGCTGTCGGGGGAAGTTTTAGAGGTGTGGACTTCTCAAATGCAGTCTTGGATCGTGTTAATTTTGGAAAAGCTTATCTTGAAGGAGCTGTATTTAGGAACACAGTTTTATCGGGCCCCACTTTTGATGAAACTAAGTTAGATGGTGCAGTTTTTGAGGACCCTATCATTGGTTACATTGATCTTCAGAAGATATGCAGAAATACGACCATCAGTGACGAGGGAAGAGCTGAGCTAGGATGTCGATGA 711 0.4304 MANISISLPRTGLSIRNISTKRPCFTISASPLRLTCSLVDGSDNNKAKLLNFNRIKGVACGILAAYTLTSGSFPVTAATQRLPPLSTEPDRCKRAFVGNTIGQANGVYDKPLDLRKCDFTNEKSNLKGKTLSATLMSEAKFDGADMTEIVMSKAYAVGGSFRGVDFSNAVLDRVNFGKAYLEGAVFRNTVLSGPTFDETKLDGAVFEDPIIGYIDLQKICRNTTISDEGRAELGCR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03920 236 Gene3D - 110 235 - -
Trre5g03920 236 SUPERFAMILY Pentapeptide repeat-like 112 217 - -
Trre5g03920 236 PANTHER THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC 7 236 IPR044195 -
Trre5g03920 236 Pfam Pentapeptide repeats (8 copies) 171 208 IPR001646 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03920 Trre-Chr5 40309259 40311335 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03920 - - gmx:100785667 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03920 5 40309259 40311335 Trre5g03920 5 40309259 40311335 ECH