Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1090 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1094 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1095 Acco10g2505 . Accr4g00269 . Adu08g00468 . . . . . . . . . Alju08g0274 . . . Apr1g0707 . Arst8g00597 . . . Bisa09g0962 . Bva12g01988 . . . . . Dere04g1176 . . . Enph1g1797 . Glsi08g0996 . . . . . . . . . . . . . . . . . . . . . Lapu9g01383 . Lasa5g02967 . Lele01g0218 Lele02g0216 Lele03g0224 Lele04g0218 . . . . Lja1g4889 . . . Mepo3g06505 . Mesa9g04028 . Mibi05g0228 . . . Phac9g01080 . Phco7g01385 . Prci15g0335 . . . Pste2g03379 . . . . . Pumo10g01367 . Pvu9g1417 . Rops10g02052 . Seca4g02505 . Spst9g01425 . . . Sto9g2784 . . . Trre5g03789 . . . Vian4g01416 . Vifa2g02758 . Vimu10g02431 . Viun9g02243 . Vivi3g02898 . . .
Vvi16g1096 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g02947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1097 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g01989 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g5740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1098 . . . . . . . . . . . Ahy16g2730 . Aip06g03076 . . . Amo16g3457 . . . . . . . . Bva12g01990 Bva06g02946 . . . . . . . Dod08g1430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g5741 . . . . . . . . . . . . . . . . . Psa6g0905 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Bva Bva12g01988 Chr12 15739152 15744876 -
Vvi Vvi16g1089 Chr16 19235134 19235337 +
Vvi Vvi16g1090 Chr16 19238848 19239593 +
Vvi Vvi16g1091 Chr16 19240225 19244673 -
Vvi Vvi16g1092 Chr16 19247071 19251841 -
Vvi Vvi16g1093 Chr16 19253283 19259022 -
Vvi Vvi16g1094 Chr16 19263541 19269664 -
Vvi Vvi16g1095 Chr16 19278042 19288558 -
Acco Acco10g2505 Chr10 36314522 36322363 +
Accr Accr4g00269 Chr4 2683547 2688065 -
Adu Adu08g00468 Chr08 8466667 8469957 -
Alju Alju08g0274 Chr08 1996875 2001946 -
Apr Apr1g0707 Chr1 8447329 8452387 -
Arst Arst8g00597 Chr8 8438447 8442197 -
Bisa Bisa09g0962 Chr09 14062983 14068952 -
Bva Bva12g01988 Chr12 15739152 15744876 -
Dere Dere04g1176 Chr04 13135570 13141265 +
Enph Enph1g1797 Chr1 42946353 42952465 +
Glsi Glsi08g0996 Chr08 7365683 7370494 -
Lapu Lapu9g01383 Chr9 28055410 28060723 -
Lasa Lasa5g02967 Chr5 522531775 522535727 +
Lele Lele01g0218 Chr01 1244133 1253602 -
Lele Lele02g0216 Chr02 1199867 1204717 -
Lele Lele03g0224 Chr03 1223573 1228313 -
Lele Lele04g0218 Chr04 1297710 1302226 -
Lja Lja1g4889 Chr1 67001494 67010572 -
Mepo Mepo3g06505 Chr3 79044783 79049320 +
Mesa Mesa9g04028 Chr9 72763108 72767395 +
Mibi Mibi05g0228 Chr05 2338485 2344309 -
Phac Phac9g01080 Chr9 8269996 8271300 +
Phco Phco7g01385 Chr7 12576894 12600070 +
Prci Prci15g0335 Chr15 2203864 2211381 -
Pste Pste2g03379 Chr2 33862423 33871146 +
Pumo Pumo10g01367 Chr10 18154618 18159917 +
Pvu Pvu9g1417 Chr9 20120662 20129547 +
Rops Rops10g02052 Chr10 37343370 37347872 +
Seca Seca4g02505 Chr4 42816883 42822325 +
Spst Spst9g01425 Chr9 14199910 14204606 +
Sto Sto9g2784 Chr9 29547283 29551276 -
Trre Trre5g03789 Chr5 38280018 38285360 +
Vian Vian4g01416 Chr4 28618098 28621671 -
Vifa Vifa2g02758 Chr2 763030658 763034710 -
Vimu Vimu10g02431 Chr10 35264701 35268334 +
Viun Viun9g02243 Chr9 31878251 31881806 -
Vivi Vivi3g02898 Chr3 48240360 48244355 -
Vvi Vvi16g1096 Chr16 19301911 19303838 +
Bva Bva06g02947 Chr06 18354569 18356152 -
Psa Psa6g0906 Chr6 34076773 34078626 -
Vvi Vvi16g1097 Chr16 19309225 19310778 +
Bva Bva12g01989 Chr12 15747580 15749169 +
Lja Lja1g5740 Chr1 101872455 101874751 -
Vvi Vvi16g1098 Chr16 19314139 19317224 +
Ahy Ahy16g2730 Chr16 139887584 139891334 +
Aip Aip06g03076 Chr06 125801409 125805126 +
Amo Amo16g3457 Chr16 143494067 143497763 +
Bva Bva12g01990 Chr12 15750395 15752749 +
Bva Bva06g02946 Chr06 18350365 18353488 -
Dod Dod08g1430 Chr08 26780790 26790258 +
Lja Lja1g5741 Chr1 101882647 101886403 +
Psa Psa6g0905 Chr6 34064328 34068849 -