Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4889 ATGACGGATTCTGAGCGAATTCAGAACCCGTGGATGGCTTCGGCGGCGGTTACGATGAAATCTCAGGGTGGTTGCGATTCCGGTGAACGGTTTTCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCAGCAATCAGCCAATACCGGTGAGCAATTGGGAGTTGTAGAACGTGCTTTCTCTGCTGCCGGCGCCGCCTTCCTCTCCGCCGTCATTGTAAACCCCCTCGATGTTGCTAAGACAAGGTTGCAAGCGCAAGCTGCAGGAGTCGCTTATTCTCATCCACTCGGTGACTTGACCAGTCGTATGGCTTGTTTTGGCCCGAATATGATGTTTGCTGATTTAAGATGTTCTCCATCGTGTGCTCGGGCTGGAATTCAGGGCACTGTATCGATTTGTCCACCTGAGTGTTTCCGGTACAAAGGAACTCTGGATGTCCTTTGCAAAATTACACAACAGGAAGGATTTACTAGGTTATGGAGAGGCACAAATGCTGGCCTGGCACTTGCAGTTCCAACTGTAGGAATTTACCTTCCATGCTACGATATATTCCGCAACTGGTTGGAGGAATTTACGGCCAAAAATGCCCCAATGACTACTCCATATGTACCTTTATTGGCTGGTTCGTTGGCACGCTCGTTGGCTTGTGCAACTTGTTATCCTATAGAACTTGCGAGAACTCGAATGCAGGCATTTCAAAATGGTAAAAAGCCTCCTGGAGTTGTTCAGACTCTGCTAGGTGTTGTCTCACACGTCAGGAGCACAAATAGTCCACAGAACAGCTTGCAAGGTTATCGTGTCCTGTGGACTGGCATGGGAGCTCAACTTGCCCGTGATGTACCATTCTCTGCGATTTGTTGGTCAACACTTGAACCAACTAGAAGAAAACTTCTAAGTTTGGTTGGAGGCGATGATGCCAATGCGTTGAGTGTCCTTGGTGCAAATTTTTCAGCTGGTTTTGTTGCAGGAACTCTAGCAGCTGGAGCTACATGTCCACTAGATGTTGCAAAAACTCGAAGGCAGATAGAGAGGGATCCTGTCAGGGCATTAACGATGACTACAAGACAGACGCTAATGGAAGTTTGGAGGGATGGAGGCTTGAAAGGACTCTTTACTGGCTTTGGTCCGCGAGTTGGTCGAGCAGGACCCTCGGTGGGAATTGTGGTTTCATTTTATGAAGTTGTAAAGTATGTTCTACATCACCGGCACACAACATCATGA 1218 0.491 MTDSERIQNPWMASAAVTMKSQGGCDSGERFSPPPPPPPPPPQQSANTGEQLGVVERAFSAAGAAFLSAVIVNPLDVAKTRLQAQAAGVAYSHPLGDLTSRMACFGPNMMFADLRCSPSCARAGIQGTVSICPPECFRYKGTLDVLCKITQQEGFTRLWRGTNAGLALAVPTVGIYLPCYDIFRNWLEEFTAKNAPMTTPYVPLLAGSLARSLACATCYPIELARTRMQAFQNGKKPPGVVQTLLGVVSHVRSTNSPQNSLQGYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLLSLVGGDDANALSVLGANFSAGFVAGTLAAGATCPLDVAKTRRQIERDPVRALTMTTRQTLMEVWRDGGLKGLFTGFGPRVGRAGPSVGIVVSFYEVVKYVLHHRHTTS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4889 405 MobiDBLite consensus disorder prediction 30 45 - -
Lja1g4889 405 Pfam Mitochondrial carrier protein 51 188 IPR018108 -
Lja1g4889 405 Pfam Mitochondrial carrier protein 313 400 IPR018108 -
Lja1g4889 405 Pfam Mitochondrial carrier protein 200 296 IPR018108 -
Lja1g4889 405 ProSiteProfiles Solute carrier (Solcar) repeat profile. 52 186 IPR018108 -
Lja1g4889 405 Gene3D Mitochondrial carrier domain 121 405 IPR023395 -
Lja1g4889 405 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 295 IPR018108 -
Lja1g4889 405 PANTHER BNACNNG35730D PROTEIN 45 404 - -
Lja1g4889 405 PANTHER FI19922P1-RELATED 45 404 IPR045315 GO:1990542
Lja1g4889 405 MobiDBLite consensus disorder prediction 18 48 - -
Lja1g4889 405 Gene3D Mitochondrial carrier domain 40 103 IPR023395 -
Lja1g4889 405 ProSiteProfiles Solute carrier (Solcar) repeat profile. 309 397 IPR018108 -
Lja1g4889 405 SUPERFAMILY Mitochondrial carrier 51 393 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4889 Lja-Chr1 67001494 67010572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4889 148 395 Organic Solute Cotransporters AT3G55640 27.165 1.96e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4889 K15119 - gmx:100810960 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4889 1 67001494 67010572 Lja1g4889 1 67001494 67010572 ECH