Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1095 ATGAAGGCAATGACGGAATCAGAGAATAGGGGCAAGTTGTGGATGAGTACACAGCAATCCTCACCAATGGATTTGAACGGGCACGATTCTGCAATGTTGCAATCAACGGTTACATTTGTAGCAGAGGCTTCATCTCCGGAGACTCAACGTTCAAAGAGCAAATCCGAAAACGATATGCGGTTCTTAGAACGGTCATTCTCTGCCGCGGGCGCCGCTGTCCTCTCGGCCATCCTCGTTAACCCTCTCGATGTCGCCAAGACAAGGTTGCAAGCACAGGCAGCTGGAGTTCCTTACTCACATCCACTAAGTAATGTTATGAGTCGGATGGCATATTTTGGACCAAATATGTTGTTTGCTGATTTGAGGTGTTCGCCATCATGCCCCCGTGTAGGAATTCATGGTACAGTAGCAATTTGTCCCCCTGATTGTTTTCAATACAAAGGAACATGGGATGTTTTCTACAAAATTATTCGACAGGAAGGATTTGCAAGGCTATGGAGAGGTACAAATGCAGGTCTAGCACTGGCTGTACCAACAGTGGGAATCTACCTACCTTGCTATGATATTTTCCGCAACAGGCTAGAGGAATTCACGGCTCAAAATGCTCCCAGCTTGACAGTATATGTTCCCTTAGTTGCGGGTTCACTGGCTCGCTCATTAGCTTGTGCTACTTGTTATCCTATTGAACTTGCAAGAACTCGGATGCAGGCATTTAAGGAGATCCACGGTGGTAAGAAGCCTGCTGGAGTCTTCAAAACACTAGTTGAGGTTGTCTCCCATTTCAAAAGCACAAATAATGTTCAAAGTTTGCGGAGCTACCGTGTCCTGTGGACAGGCATTGGAGCACAACTTGCTCGTGATGTTCCTTTCTCTGCAATTTGTTGGTCAACCCTGGAGCCAATGAGAAGAAAACTCCTTAGTCTGGTGGGGGAAGATGCCAATGCAGCCAGTGTCCTTGGGGCAAATTTTTCTGCTGGTTTTGTTTCAGGGAGTCTTGCTGCTGCTGCTACATGTCCATTAGATGTTGCAAAAACCCGAAGGCAGATAGAGAATGACCCTGCCAGGGCATTGAGGATGACAACAAGGCAAACACTACTCGAGGTTTGGAGGAATGGAGGGATGAAGGGACTATTCACAGGAGCAGGTCCTCGTGTTGCTCGGGCCGGTCCTTCAGTTGGAATCGTGGTTTCATTTTATGAAGTTGTGAAGTATGGCCTAAATCACCAGTTCTCAACTTCATGA 1242 0.4702 MKAMTESENRGKLWMSTQQSSPMDLNGHDSAMLQSTVTFVAEASSPETQRSKSKSENDMRFLERSFSAAGAAVLSAILVNPLDVAKTRLQAQAAGVPYSHPLSNVMSRMAYFGPNMLFADLRCSPSCPRVGIHGTVAICPPDCFQYKGTWDVFYKIIRQEGFARLWRGTNAGLALAVPTVGIYLPCYDIFRNRLEEFTAQNAPSLTVYVPLVAGSLARSLACATCYPIELARTRMQAFKEIHGGKKPAGVFKTLVEVVSHFKSTNNVQSLRSYRVLWTGIGAQLARDVPFSAICWSTLEPMRRKLLSLVGEDANAASVLGANFSAGFVSGSLAAAATCPLDVAKTRRQIENDPARALRMTTRQTLLEVWRNGGMKGLFTGAGPRVARAGPSVGIVVSFYEVVKYGLNHQFSTS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1095 413 ProSiteProfiles Solute carrier (Solcar) repeat profile. 205 304 IPR018108 -
Vvi16g1095 413 Gene3D Mitochondrial carrier domain 140 412 IPR023395 -
Vvi16g1095 413 MobiDBLite consensus disorder prediction 10 28 - -
Vvi16g1095 413 SUPERFAMILY Mitochondrial carrier 58 401 IPR023395 -
Vvi16g1095 413 ProSiteProfiles Solute carrier (Solcar) repeat profile. 317 405 IPR018108 -
Vvi16g1095 413 PANTHER FI19922P1-RELATED 47 409 IPR045315 GO:1990542
Vvi16g1095 413 ProSiteProfiles Solute carrier (Solcar) repeat profile. 59 193 IPR018108 -
Vvi16g1095 413 MobiDBLite consensus disorder prediction 1 28 - -
Vvi16g1095 413 Pfam Mitochondrial carrier protein 321 408 IPR018108 -
Vvi16g1095 413 Pfam Mitochondrial carrier protein 59 194 IPR018108 -
Vvi16g1095 413 Pfam Mitochondrial carrier protein 205 305 IPR018108 -
Vvi16g1095 413 Gene3D Mitochondrial carrier domain 29 121 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1095 Vvi-Chr16 19278042 19288558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1095 155 403 Organic Solute Cotransporters AT3G55640 27.059 1.94e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1095 K15119 - vvi:100246753 825.469