Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1091 ATGGAGAGGAAGCAATGGAAGAAGGCTGAAACTGCACCCAAAGATTTGATGGGTTTGGTATTTTCTTGGTCTCTGAAAGATATACTCAACAAAAATCTTTACAAAAACAAGGTGAAAATGATCCCTGATACGTTCTTGTCTGTGTCTCATTACTTGACATCATTCATTTACCCGCTTATCGAGGAAACGCATGCTGATTTATTGTCAAGCATGACAATGGTTTCTCAAGCTCCCCTATGTGAAATACTCTCTGTTGAAACAACTAAAGATTATGAACCTCCCACAAACTTGAAGTACAAGATTACACTGAAGGTAATAAGGAATAATGGAAATGATGCAGAAATATATGAACCTGAGACTGGGGATCTGATTGCATTGACAGATGTAAGACCAAAATGCATCAGTGATTTAAACAGGCCTAAGATATCTTATACTGTTGCTTCAGTTGTAGCAAAGCCAGTAAGAGACCCTGATGAACCGCCACCAGAGGAAGACACTTGTATAGTGCTCTCATCAAAGCCCATTGAGTTTGAGCAAAACATGGAGACAAATAAGAAGAGGAAAACTCTTTTTGCTGTTTTCCTAATAAATATGATAACTAATAATCGTATATGGGCAGCATTGAATATAGGTCCAGACCTGGGCAACAAGAGTATTATTCAGAAAGTGCTGCAACCTGATTCCTTGGCTGGGGAAGAATGTGCCCTCTGCAGCTCTGATTCAGTATCAAACTCGGAGCCCATGGTCAGTTCTTTTGATCTAAATGACTCTCAAAAGGCTGCAGTGCTAAGCTGTATCGCTGCAAGGGAGTGTCATCATCAGAATAGTATCAAACAAATATGGGGGCCTCCTGGGACTGGGAAAACAAAGACGGTTGCTACATTACTATTTGCACTCTATAGGATGAAATGCAGAACAGTAACATGTGCTCCTACTAATATTGCAGTGTTAACAGTTACAGAGAGGCTGGTGGGTTTGGTTAGAGATTCAAATGAATATGGCACTTATGGACTGGGAGATATACTTCTATTTGGGAATGGTAAGCGAATGAAGATTGATGATCATCGTGACCTACACGATGTCTTTCTTGATTTCCGTGTTAAAATTCTAGCAAACTGTTTTTCCCCACGTTCTGGGTGGAAGCATTCTTTAGAATCTATGATATGTTTGCTTGAAGACCCTAAGGAAATGTATTCTACCTACTTGAGAGAGAGGATGAACCAGGGAAAGGGAGTTCAAACCAATCAAGAGAAAGAGGAGGACATCCAGTCTCAATCCTTCAACAAAGACGGAAGAAAGAACAAGAAAAGTTGGATGAGGAAAGATATTGAACGAACTTTAAAAAATAGCAAGAAAGGGAAAGGGAAAAAACAGCAAGACAAGAATAGCGAAGGAGCAACTGATGGAAGTTGTGATAAACTTCTCACATTGGAAGAGTTCTTCAAGAAAAAATTTTATGACATTGTAAATAATCTGAAATTTTGCATTCCAAAATTGCGTACCCACTTACCAACTTCTCTCATTCCTTTAGAAGTAGCAAAAAATATGATTGGAGCTCACAGATTGCTAGAATCTTTCATAACTTTGTTCCAAAATGTTTCTGTTGAAAGTAAAGGGTTGAAGGAAGTCATCGAAAAAATTGGAGATGCAGGAAAAAGTGTTGATCGCTTCTGTAAATTCCATAAGACCAGAAGAAAGTTCCTTGAAATACTCAGATGCCTTCGCCAAGCAATTGAAGTTCCAAATACTACTGATCATTATCGGATCAAAAGTTTTTGTTTACAGAATGCGACCTTGCTTTTCTGCACTGCATCAAGCTCAGCAAAAATTCCAGTAGGTGGGAAACCCATTGAATTGTTGGTTATTGATGAAGCTGCTCAGCTAAAGGAATGTGAGTCAGCCATCCCTCTACAAATTTCCGGTATCCGCCATGCCATTCTCATAGGGGATGAGTTGCAACTACCGGCAATGGTTAAGAGCAAGATTTCTGAGGAGGCCAAATTTGGAAGAAGTTTGTTCCAGAGGCTGGTATTGTTAGGACACAGAAAGCACCTTCTCAATCTCCAGTACAGAATGCATCCATCCATAAGCTTGTTTCCAAATAGAGAGTTCTATGACAATCTGATTTTGGATGCTCCCAATGTCAAGGAGAGAAAATATGAAAGGTCTTACCTGCATGGAAACATGTATGGTAGCTACTCCTTTATAAACGTAGCCTATGGAAAAGAGGAATTTGATTACAGGTATAGCACAAGAAACATGGTGGAGGTAGTTGTGGTCTCTGAGATGGTTGCAACCCTTGCTAAAGCAACCAAGGGCAGGAAACAGAGGGTAAGTGTTGGTATCATATCACCATACAAGGCTCAAGTTTATGCAATTCAAGATAGACTGGGAAAGAAATACACATCAAGTGCAGATGGTAAATTCTCTGTGAGTGTTCGTTCTGTTGATGGGTTTCAAGGGGGTGAGGAGGATATCATTATTATCTCCACTGTCAGATGTAATTTGAAAGGTTCAGTGGGATTCATTTCTAATCGTCAACGCACAAATGTGGCTCTAACCCGAGCAAGGTATTGCCTTTGGATATTTGGAAATGGTCCAACTCTAGAACACAGTGGTACTGTTTGGGGGAAACTAGTCAATGATGCCAAAGATCGGGGGTGTTTCCATAATGCTGAAGAGGACAATAACTTAGCTCGGGCTATCACTACATCCTTGGTTGAACTTGGCGAGCTTCATCTTTTACAGAAGCAAGATTCATTACTCTTCAGGAAGGCAAGATGGAAGGTTCACTTCTCAGATGATTTTTGGAAATCCATGGTAAGAATTAAGAGTGTCGAGATTCATAACAAGGTGTTTTGTCTATTGGAGAAGCTTTCAAGTGGTTGGCGTCGACCCGACAATGAGGCAAACCCTAACACCATCAATGGGACTTGTTTGCAACTGTTGGAGCTGTACAAGGTCACTAAAATACTCAATCTAGTTTGGAGTGTAGAGATTCTCAAGGAAGATTCAAACTACATCCAGGTTTTGAAGGTTTGGGACATTTTGCCAATGGAAAGAACACCAAAACAAGCAGCGCGTCTAGAGAACTTGTTTGGGAACAAACGAGTGATTGATATGGACCACTGCAAATTCAAATGTGTAGAAGGGAATCTTGAAGTTCCTATGACATGGCCAGCGGATGATGAACCAGAACAGTCGTTGAGTTCATTTAAATCACTCAGTCTTCAGAGTTGA 3240 0.4028 MERKQWKKAETAPKDLMGLVFSWSLKDILNKNLYKNKVKMIPDTFLSVSHYLTSFIYPLIEETHADLLSSMTMVSQAPLCEILSVETTKDYEPPTNLKYKITLKVIRNNGNDAEIYEPETGDLIALTDVRPKCISDLNRPKISYTVASVVAKPVRDPDEPPPEEDTCIVLSSKPIEFEQNMETNKKRKTLFAVFLINMITNNRIWAALNIGPDLGNKSIIQKVLQPDSLAGEECALCSSDSVSNSEPMVSSFDLNDSQKAAVLSCIAARECHHQNSIKQIWGPPGTGKTKTVATLLFALYRMKCRTVTCAPTNIAVLTVTERLVGLVRDSNEYGTYGLGDILLFGNGKRMKIDDHRDLHDVFLDFRVKILANCFSPRSGWKHSLESMICLLEDPKEMYSTYLRERMNQGKGVQTNQEKEEDIQSQSFNKDGRKNKKSWMRKDIERTLKNSKKGKGKKQQDKNSEGATDGSCDKLLTLEEFFKKKFYDIVNNLKFCIPKLRTHLPTSLIPLEVAKNMIGAHRLLESFITLFQNVSVESKGLKEVIEKIGDAGKSVDRFCKFHKTRRKFLEILRCLRQAIEVPNTTDHYRIKSFCLQNATLLFCTASSSAKIPVGGKPIELLVIDEAAQLKECESAIPLQISGIRHAILIGDELQLPAMVKSKISEEAKFGRSLFQRLVLLGHRKHLLNLQYRMHPSISLFPNREFYDNLILDAPNVKERKYERSYLHGNMYGSYSFINVAYGKEEFDYRYSTRNMVEVVVVSEMVATLAKATKGRKQRVSVGIISPYKAQVYAIQDRLGKKYTSSADGKFSVSVRSVDGFQGGEEDIIIISTVRCNLKGSVGFISNRQRTNVALTRARYCLWIFGNGPTLEHSGTVWGKLVNDAKDRGCFHNAEEDNNLARAITTSLVELGELHLLQKQDSLLFRKARWKVHFSDDFWKSMVRIKSVEIHNKVFCLLEKLSSGWRRPDNEANPNTINGTCLQLLELYKVTKILNLVWSVEILKEDSNYIQVLKVWDILPMERTPKQAARLENLFGNKRVIDMDHCKFKCVEGNLEVPMTWPADDEPEQSLSSFKSLSLQS* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1091 1079 Pfam Domain of unknown function (DUF6469) 81 210 IPR045529 -
Vvi16g1091 1079 Pfam AAA domain 254 661 IPR041677 GO:0004386
Vvi16g1091 1079 PANTHER DNA2/NAM7 HELICASE FAMILY 13 994 IPR045055 -
Vvi16g1091 1079 Gene3D - 690 904 IPR027417 -
Vvi16g1091 1079 CDD SF1_C_Upf1 692 884 IPR047187 -
Vvi16g1091 1079 MobiDBLite consensus disorder prediction 414 449 - -
Vvi16g1091 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 873 IPR027417 -
Vvi16g1091 1079 Pfam AAA domain 669 865 IPR041679 -
Vvi16g1091 1079 MobiDBLite consensus disorder prediction 1059 1079 - -
Vvi16g1091 1079 FunFam P-loop containing nucleoside triphosphate hydrolase 690 899 - -
Vvi16g1091 1079 MobiDBLite consensus disorder prediction 407 468 - -
Vvi16g1091 1079 Gene3D - 173 689 IPR027417 -
Vvi16g1091 1079 MobiDBLite consensus disorder prediction 1064 1079 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1091 Vvi-Chr16 19240225 19244673 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1091 - K10706 vvi:100244982 2108.95