Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02052 ATGGTAGATTCAGAGCGAATCCAAAATCCATGGATGGCTTCCATGCAAACTGCAGTTACAATGAACGCAAAGGATGCAGATTCCACGGAATCATTTTCTCTTCCTTCGCCGCCGCAATCATCCGCTACTGTTAAATTGGGAATTGGTGAACGAGCTTTCTCTGCCGCCGGCGCCGCCTTCCTCGCCGCCATCATTGTCAATCCCCTCGATATTGCCAAGACAAGGTTGCAAGCACAAGCTGCAGGGGTTGCTTATTCTCATCCACTCAGTAACATGACGAGTCGTATGGCTTGTTTTGGTCCAAATATGATGTTTGCTGATTTAAGATGTTCTCCAACATGTAATCGGGCTGGAATCCATGGCACAGTATCACTTTGTCCTCCTGAGTGTTTTCGGTACAAAGGAACACTGGATGTCATCTACAAAATTATACGACAGGAAGGATTTGCTAGGCTATGGAGAGGCACAAATGCAGGCCTGGCACTTGCAGTACCAACTGTTGGAATTTACCTTCCCTTCTATGACATATTCCGCAAATGGTTGGAGGAATTCACAGCCGAAAATGCTCCACTCACAACTCCATATGTACCTTTAGTGGCTGGTTCATTGGCACGCTCACTGGCTTGTGCAACTTGTTATCCTATTGAACTTGCTAGAACTCGAATGCAGGCATTTAAAGAGACTCAAATTGGTAAAAAGCCTCCTGGAGTGTTCCAGACTCTGCTAAGTGTTGTCTCACATGTCAAGAGGACAAATAGTCCACAAAACAGCTTGCAAGGTTATCGTGCCCTGTGGACTGGCATGGGAGCTCAACTTGCCCGTGATGTACCCTTCTCTGGGATTTGTTGGGCTACACTTGAACCGACTAGAAGAAAACTTCTTAGTTTGGTTGGAGGTGATGATGCCAACGCATTGAGTGTTCTTGGTGCAAATTTTTCAGCTGGTTTCGTTGCAGGAACTCTAGCAGCTGGAGCCACATGTCCACTAGATGTTGCAAAAACTCGAAGGCAGATAGAGAGGGATCCTATTAGGGCAATGACGATGACTACAAGGCAGACACTGATAGAGGTTTGGAGAGATGGAGGCATGAGAGGACTGTTTACAGGTTTTGGTCCAAGAGTTGGTCGAGCAGGACCCTCCGTTGGAATTGTGGTTTCATTTTATGAAGTTGTAAAGTTTGCGCTCAATCACCGGCACACAACATCATGA 1209 0.464 MVDSERIQNPWMASMQTAVTMNAKDADSTESFSLPSPPQSSATVKLGIGERAFSAAGAAFLAAIIVNPLDIAKTRLQAQAAGVAYSHPLSNMTSRMACFGPNMMFADLRCSPTCNRAGIHGTVSLCPPECFRYKGTLDVIYKIIRQEGFARLWRGTNAGLALAVPTVGIYLPFYDIFRKWLEEFTAENAPLTTPYVPLVAGSLARSLACATCYPIELARTRMQAFKETQIGKKPPGVFQTLLSVVSHVKRTNSPQNSLQGYRALWTGMGAQLARDVPFSGICWATLEPTRRKLLSLVGGDDANALSVLGANFSAGFVAGTLAAGATCPLDVAKTRRQIERDPIRAMTMTTRQTLIEVWRDGGMRGLFTGFGPRVGRAGPSVGIVVSFYEVVKFALNHRHTTS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02052 402 Gene3D Mitochondrial carrier domain 124 402 IPR023395 -
Rops10g02052 402 Pfam Mitochondrial carrier protein 310 397 IPR018108 -
Rops10g02052 402 Pfam Mitochondrial carrier protein 47 182 IPR018108 -
Rops10g02052 402 Pfam Mitochondrial carrier protein 195 293 IPR018108 -
Rops10g02052 402 SUPERFAMILY Mitochondrial carrier 51 390 IPR023395 -
Rops10g02052 402 Gene3D Mitochondrial carrier domain 14 99 IPR023395 -
Rops10g02052 402 ProSiteProfiles Solute carrier (Solcar) repeat profile. 46 180 IPR018108 -
Rops10g02052 402 PANTHER FI19922P1-RELATED 30 398 IPR045315 GO:1990542
Rops10g02052 402 ProSiteProfiles Solute carrier (Solcar) repeat profile. 306 394 IPR018108 -
Rops10g02052 402 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 292 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02052 Rops-Chr10 37343370 37347872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02052 142 393 Organic Solute Cotransporters AT3G55640 27.519 6.49e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02052 K15119 - gmx:100810960 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02052 10 37343370 37347872 Rops10g02052 10 37343370 37347872 ECH