Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03789 ATGGTAGATTCAGAGCGAATCCAAAACCCATGGATGGCTTCCGAACATACTTCAATTCAAATGAATCTCAACGCCAACGCCACACAACGATTTTCTTCTCCTTCGAAATCATCGTTAAATAACGATAAATTAGGGGTTGCTGAACGCGCTTTCTCCGCCGCCGGCGCCGCCGTCCTCTCCGCCGTCATTGTCAACCCCCTTGATGTTGCTAAGACAAGGTTGCAGGCACAAGCTGCAGGAGTCGCTTATTCTCATCCGCTCAGTAATTTGAACAGTAGAATGTCTTGTTTTGGGCCAAATATGATGTTTGCTGATTTAAGATGTTCTCCATCATGTACTCGGGCTGGACTCCATGGCACCGTATCACTCTGTCCTCCCGATTGTTTTCGGTACAAAGGAACACTGGATGTTATGTATAAAATTATACAACAGGAAGGATTTACTAGGCTATGGAGAGGCACAAATGCAGGCCTGGCACTTGCAGTACCGACTGTTGGAATTTACCTTCCTTGCTATGACATATTCCGCAACTGGTTCGAGGAATACACAACCAAAAATGCTCCAACCGCAACTCCATATGTACCTTTAGTGGCTGGTTCGTTGGCACGCTCACTTGCTTGTGCAACTTGTTATCCTATTGAACTTGCCAGAACTCGCATGCAGGCATTTAAAGAGACTGAAATCGGTAAAAAGCCACCTGGAGTATACCAGACTTTGGCAGGTGTTGTCAATGTCAAGGGGACAAATAGACCACCAAACAACTTGCAAGGTTATCGTGTCCTGTGGACCGGCATGGGCGCACAACTTGCTCGTGATGTACCATTCTCTGCGATTTGTTGGTCGACACTTGAGCCTACTAGAAGAAAACTTATTAGTTTGGTTGGAGGCGATGATGCCAGTATATTGAGTATTCTTGGTGCAAATTTTTCAGCTGGTCTTATTGCAGGAACTCTAGCGGCTGGAGCTACATGTCCACTAGATGTTGCAAAAACTCGAAGGCAAATAGAGATGGATCATGTCAGAGCATTGAAGATGACTACGAGACAGACACTGGTGGAGATTTGGAGAGATGGAGGCTTGAAAGGACTTTTTACTGGTCTCGGTCCACGAGTTGGTCGAGCTGGTCCCTCTGTTGGAATTGTGGTTTCATTTTATGAAGTTGTAAAGTTTGTCCTAAATCACCGGCACACAACATCATGA 1200 0.4567 MVDSERIQNPWMASEHTSIQMNLNANATQRFSSPSKSSLNNDKLGVAERAFSAAGAAVLSAVIVNPLDVAKTRLQAQAAGVAYSHPLSNLNSRMSCFGPNMMFADLRCSPSCTRAGLHGTVSLCPPDCFRYKGTLDVMYKIIQQEGFTRLWRGTNAGLALAVPTVGIYLPCYDIFRNWFEEYTTKNAPTATPYVPLVAGSLARSLACATCYPIELARTRMQAFKETEIGKKPPGVYQTLAGVVNVKGTNRPPNNLQGYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLISLVGGDDASILSILGANFSAGLIAGTLAAGATCPLDVAKTRRQIEMDHVRALKMTTRQTLVEIWRDGGLKGLFTGLGPRVGRAGPSVGIVVSFYEVVKFVLNHRHTTS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03789 399 Pfam Mitochondrial carrier protein 192 290 IPR018108 -
Trre5g03789 399 Pfam Mitochondrial carrier protein 44 181 IPR018108 -
Trre5g03789 399 Pfam Mitochondrial carrier protein 307 394 IPR018108 -
Trre5g03789 399 Gene3D Mitochondrial carrier domain 12 97 IPR023395 -
Trre5g03789 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 303 391 IPR018108 -
Trre5g03789 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 44 178 IPR018108 -
Trre5g03789 399 SUPERFAMILY Mitochondrial carrier 42 387 IPR023395 -
Trre5g03789 399 Gene3D Mitochondrial carrier domain 250 399 IPR023395 -
Trre5g03789 399 Gene3D Mitochondrial carrier domain 113 249 IPR023395 -
Trre5g03789 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 190 289 IPR018108 -
Trre5g03789 399 PANTHER FI19922P1-RELATED 36 395 IPR045315 GO:1990542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03789 Trre-Chr5 38280018 38285360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03789 140 393 Organic Solute Cotransporters AT3G55640 27.308 2.02e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03789 K15119 - gmx:100810960 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03789 5 38280018 38285360 Trre5g03789 5 38280018 38285360 ECH