Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1092 ATGGAGAGGATGCAAGGAAGGAAGGCAGAGAATGCAGACAGAAGCTTGGTAGATTTGGTGTTTTCCTGGTCTCTAAGAGATGTACTTTACAAAGATCTTCACAGAAATAAGGTCAGGAAGATCCCAGATACATTCTTGTCAACATCTCATTACTTGACATCATTCATTAACCCACTTATTGAGGAAACACATGCTGATTTGTCTTCAAGTATGACTACATTGGCCCGGGCACCTATATGTGAAGTGCTCTCGGTCAAAATATCCAAAGATTTTAAGCCTCCTAGAGACTTGTTCTACGAAATTTCATTGAAGAGACTGAGGGATACTGCAAATGAAGCAGGAATATATGAACCTGAGAAAGGAGATCTCATTGCATTTACAGATGTAAGACCAAAATCCATTAGTGATTTAGACAGGCCTAAGAGACCATATGTTATTGCTTTAGTGCAGGGACCACTGGGTGAAACTTCTAACAAGCTTCCAATACTCTCTTCAAAACTCATAGAGTGCTTTGAACAAAGGATGGCGATGGATCATAAGAGAGAAACAGAGGCGGATAAGAAGAAAGAAACTCTTTTTGCTGTTTTTCTAACAAATATGACAACGAATATTCGTATATGGACGGCATTGCATTTGGGTCAGGAAAGGGGCAACATGAGTTTAATTCAGAAAGTGCTGCAATCTGATTCTTCTGCTGAGAACACATGTACTCTCTGCTTCTCCAACCCTGCATCAGTTTGGGACCCCATAACCTGTCCTTTTAATCTAAATGACTCTCAACAAGCTGCTGTTTCAAGCTGCATTGCAGCAAGGAAGTGTGATCATCAAAATAGCGTAAAACTAATATGGGGGCCTCCTGGGACTGGAAAAACAAAGACAGTCGGTACATTATTGTTTGTGCTCTTTAGGATGAAATGCAGGACAGTTACATGTGCCCCAACTAATATTGCAGTGATAGAAGTCACAACACGGCTGGTGAGGTTGGTTAGAGAGTCAATAGAATGTGGCAGTTATGGACTGGGAGATATAGTTCTATTTGGGAATGGAGAAAGAATGAAGATCGATAAGCATGATGACCTTCTTGATGTCTTTCTTAATTTCCGTATCAATATTCTGGCCAGGTGTTTTGCTCCTCTTTCTGGTTGGAAACATTCTATAGAAAGTATGATAAGTTTGCTTGAAGACCCTGAAGAAATGTACGATAAGTATCTGAAGGAAAGAGGAGAGAAAGATGATGAAGATGATGATGAGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAATTCTCAGAGATGAAAAGCTAGAAATCAATCGAGAAAGAGAAGGAAAGATCCATCCACAATATTTCAAAGATGTGAAGGAAAAGAAAATTTGGAGGAATATTATTAATCAAACCTTGAAAAAGAACAAGAAAAAACAGCAGGAGAGTGTATCTTCTCAGGAGAATGACCAATTGAAAGATGATAAAGGAGAGAATGAGGATGAGCTCGCCCAAAAAAAGAACAACAAAATGGTAGCCAGTGGAAAGAATGATGGTTTGTTAACATTCCAAGAGTTTGTAAAGAAAAGAATTGATTCCACTGGAGAGAAACTTAAGTTTTGTATCATCAATTTGTATACCCACTTACCAACTTCATTCATTTCTATAGAAGTTGCAAAGAACATGATCAAAGCCCTTGGTTTACTAGAATCCATTGCAACTTTGCTGCATAGTAGTACTGTCTCCTTCAAGCGGTTGAAGGAAAACATCTGTGAATTTGAAGATGTAGGAAAAGCAGTTGATCAATTTTCCAAATTGCACCGGAACAGACAAGAGTGCCTTCAAATACTCAAATGCCTTCATCAGACACTCCCTGTTCCAACTATTTTCTTATATGATGAAATAAAGAACTTTTGCTTGTGCAATGCAAGCTTGATTTTCTGCACTGCTTCTAGCTCAGCAAAATTACACATGGCAGGAATGAAGCCCTTTGAATTATTGGTTATTGATGAAGCTGCTCAGCTTAAAGAATGTGAGTCAGCCATTCCTCTACAACTTGCTGGTCTCCGCCATGCCATTCTTGTAGGGGATGAGCTGCAACTACCAGCAATGGTTAAAAGCAAGATTTCTACAAGTGCTGAATTTGGAAGAAGTTTGTTTGAGAGACTGGTATCATTGGGACACAGGAAGCACCTTCTCAATCTTCAGTATAGAATGCATCCATCTATTAGCTTATTTCCAAATCAGGAATTCTACAACAATAAGATTTCAGATGCTCCCAATGTCAAAGAAAGAAGCTACAAGAGGTGTTTCCTTCAGGGAGACATGTATGGTAGCTACTCTTTTATTAATGTAGCCTATGGAAACGAGGAACAAAGTAACAGCCATAGCACTAGAAACATGGTGGAGGTAGTGGCAGTCTCAGAGATAGTTGCAAAGCTTTTCAAAGAATCTGTTGCCAACAAACAGAAGGTTAGTGTTGGTGTTATATCTCCATACAATGCTCAAGTTTTTGCCATTCAAGAAAAACTTGGAAAGACATACAGTACAAGTACACACAGTGACTTCTCTGTGAGTGTTCGTTCTGTTGATGGGTTTCAAGGTGGAGAGGAGGATGTCATTATCATCTCAACCGTAAGAAGTAATTTGAATGGAAAAGTAGGTTTTCTTTCCAATCGGCAAAGAGCAAATGTGGCTCTGACCCGAGCAAGGCATTGCCTCTGGATATTAGGGAATGGTCCAACTTTAGCAAACAGTGGCACTATATGGACAAAATTGGTCAGCAATGCCAAAGCTCGTGGGTGTTTCTATAATGCTGAAGATGACAAGAACTTGGCTCAGGCTATTGCCACATCCTTGGTCGAGCATGGCTATTTTCATCTTTTACAGAATATGGATTCATTACTATTTAGGGAAGCAAGATGGAAAGTCTGTTTCAGCGACGATTTTTGGAAGTCCCTGGCTAAAATTAAGAGGACAGAGATTAACAAGGAAGTGCTCCGTCTACTGGAGAAGCTTTCAAGCGGATGGCGTAGTCCTAACAATGAGAAAATTCCCAATGCCATAACCGGGACTTGTTCTGAGCTTTTCCAGCAGTACAAGGTCAATGGGCTACTCGATCTAGTTTGGACTACAGACATTTTCAAGGAAAATTCAAACTGCACCCAAGTTTTGAAGGTTTGGGACATTCTACCACGGTCTGAAACATCAAAACTAGCTAGGCGTCTAGAAACCTTGCTTGGGAACTATACAGTGAATGACATGAATCGCTGCAAAGTCAAATGCATAGAAGGGAATTTAGAAGTTCCTATGAGATGGCCAGGGAACATGAACGACACTGGGAAGAGTCTCCTCCTTGGAGATGATCCAGGAGAGTTGCTGTCCAGGTCAATTGCATCACTCAGGATATGGGATGAATCAGATTGA 3408 0.4043 MERMQGRKAENADRSLVDLVFSWSLRDVLYKDLHRNKVRKIPDTFLSTSHYLTSFINPLIEETHADLSSSMTTLARAPICEVLSVKISKDFKPPRDLFYEISLKRLRDTANEAGIYEPEKGDLIAFTDVRPKSISDLDRPKRPYVIALVQGPLGETSNKLPILSSKLIECFEQRMAMDHKRETEADKKKETLFAVFLTNMTTNIRIWTALHLGQERGNMSLIQKVLQSDSSAENTCTLCFSNPASVWDPITCPFNLNDSQQAAVSSCIAARKCDHQNSVKLIWGPPGTGKTKTVGTLLFVLFRMKCRTVTCAPTNIAVIEVTTRLVRLVRESIECGSYGLGDIVLFGNGERMKIDKHDDLLDVFLNFRINILARCFAPLSGWKHSIESMISLLEDPEEMYDKYLKERGEKDDEDDDEGEEEEEEEEEGILRDEKLEINREREGKIHPQYFKDVKEKKIWRNIINQTLKKNKKKQQESVSSQENDQLKDDKGENEDELAQKKNNKMVASGKNDGLLTFQEFVKKRIDSTGEKLKFCIINLYTHLPTSFISIEVAKNMIKALGLLESIATLLHSSTVSFKRLKENICEFEDVGKAVDQFSKLHRNRQECLQILKCLHQTLPVPTIFLYDEIKNFCLCNASLIFCTASSSAKLHMAGMKPFELLVIDEAAQLKECESAIPLQLAGLRHAILVGDELQLPAMVKSKISTSAEFGRSLFERLVSLGHRKHLLNLQYRMHPSISLFPNQEFYNNKISDAPNVKERSYKRCFLQGDMYGSYSFINVAYGNEEQSNSHSTRNMVEVVAVSEIVAKLFKESVANKQKVSVGVISPYNAQVFAIQEKLGKTYSTSTHSDFSVSVRSVDGFQGGEEDVIIISTVRSNLNGKVGFLSNRQRANVALTRARHCLWILGNGPTLANSGTIWTKLVSNAKARGCFYNAEDDKNLAQAIATSLVEHGYFHLLQNMDSLLFREARWKVCFSDDFWKSLAKIKRTEINKEVLRLLEKLSSGWRSPNNEKIPNAITGTCSELFQQYKVNGLLDLVWTTDIFKENSNCTQVLKVWDILPRSETSKLARRLETLLGNYTVNDMNRCKVKCIEGNLEVPMRWPGNMNDTGKSLLLGDDPGELLSRSIASLRIWDESD* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1092 1135 Gene3D - 169 730 IPR027417 -
Vvi16g1092 1135 Pfam Domain of unknown function (DUF6469) 88 213 IPR045529 -
Vvi16g1092 1135 Gene3D - 731 945 IPR027417 -
Vvi16g1092 1135 PANTHER DNA2/NAM7 HELICASE FAMILY 4 1044 IPR045055 -
Vvi16g1092 1135 FunFam P-loop containing nucleoside triphosphate hydrolase 731 940 - -
Vvi16g1092 1135 MobiDBLite consensus disorder prediction 407 435 - -
Vvi16g1092 1135 MobiDBLite consensus disorder prediction 470 505 - -
Vvi16g1092 1135 MobiDBLite consensus disorder prediction 410 430 - -
Vvi16g1092 1135 Coils Coil 464 503 - -
Vvi16g1092 1135 Pfam AAA domain 710 906 IPR041679 -
Vvi16g1092 1135 MobiDBLite consensus disorder prediction 470 501 - -
Vvi16g1092 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 958 IPR027417 -
Vvi16g1092 1135 Pfam AAA domain 255 702 IPR041677 GO:0004386
Vvi16g1092 1135 CDD SF1_C_Upf1 733 925 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1092 Vvi-Chr16 19247071 19251841 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1092 - K10706 vvi:100267290 2192.93