Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02505 ATGGCGGATTCAGAGCGAATCCAAAATCCTTGGATGGCTTCGGACCAAACTGCAAATTCCACTCAACCCTTGTCTCCTCTGCTGCTCCAATCGCAATCGCAATCATCCAATACTGATAAATTGGGAATCGTAGAACGAGCTTTCTCTGCCGCCGGCGCCGCCTTCCTCTCCGCCGTCATCGTCAATCCCCTCGATGTTGCCAAGACAAGGTTGCAGGCACAAGCTGCAGGGGTCGCTTATTCTCATCCACTTGGTAATATGACCAGTCGTATGGCTTGTTTTGGGCCAAACATGATGTTTGCCGATTTAAGATGTTCTCCATCATGCACTCGGGCTGGAATCCATGGCACAGTATCACTTTGTCCTCCTGAGTGTTTTCGATATAAAGGAACATTGGATGTCCTCTACAAAATTATACAACAGGAAGGATTTTCTATGCTATGGAGAGGCACAAATGCAGGCTTGGCACTTGCAGTACCAACTGTGGGAATTTACCTTCCATGCTATGACATATTCCGCAACTGGTTGGAGGAATTCACAGCGAAAAGTGCTCCAATCACAACACCATATGTACCTTTAGTGGCTGGTTCGTTGGCACGCTCACTGGCTTGTGCAACTTGTTATCCTATTGAACTTGCCAGGACTCGTATGCAGGCGTTTAAAGAGACTCAAATTGGTAAAAAGCCTCCTGGAGTATTCCAGACTCTGCTAGGTGTTGTCTCACATGTTAAGAGCACAAATAGTCCACAGAACAGCTTGCAAGGTTATCGTGCCCTGTGGACTGGCATGGGAGCTCAACTTGCCCGTGATGTACCATTCTCTGCAATTTGTTGGTCGACACTTGAGCCAGTGAGTTTCCTTCCTAAATCATATGTACAAAGCTGTTTTACTCTTACCAGAAGAAAACTTCTTAGTTTGGTTGGAGGCGATGATGCCAGTGTATTGAGTGTCCTTGGCGCGAATTTTTCAGCCGGTTTTGTTGCAGGTACTCTTGCAGCTGGAGCTACATGTCCGCTTGATGTTGCAAAAACTCGAAGGCAGATAGAGAGGGATCCTGTTAGGGCATTGAAGATGACTACAAGACAGACACTGATGGAGGTTTGGAGAGATGGAGGCTTGAAAGGACTCTTTACTGGTTTTGGTCCACGAGTAGGTCGAGCAGGCCCCTCTGTTGGAATTGTGGTTTCATTTTACGAAGTTGTAAAGTTCGTTCTACATCACCGGTACACAACATCATGA 1239 0.4673 MADSERIQNPWMASDQTANSTQPLSPLLLQSQSQSSNTDKLGIVERAFSAAGAAFLSAVIVNPLDVAKTRLQAQAAGVAYSHPLGNMTSRMACFGPNMMFADLRCSPSCTRAGIHGTVSLCPPECFRYKGTLDVLYKIIQQEGFSMLWRGTNAGLALAVPTVGIYLPCYDIFRNWLEEFTAKSAPITTPYVPLVAGSLARSLACATCYPIELARTRMQAFKETQIGKKPPGVFQTLLGVVSHVKSTNSPQNSLQGYRALWTGMGAQLARDVPFSAICWSTLEPVSFLPKSYVQSCFTLTRRKLLSLVGGDDASVLSVLGANFSAGFVAGTLAAGATCPLDVAKTRRQIERDPVRALKMTTRQTLMEVWRDGGLKGLFTGFGPRVGRAGPSVGIVVSFYEVVKFVLHHRYTTS. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02505 412 ProSiteProfiles Solute carrier (Solcar) repeat profile. 187 287 IPR018108 -
Seca4g02505 412 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g02505 412 ProSiteProfiles Solute carrier (Solcar) repeat profile. 316 404 IPR018108 -
Seca4g02505 412 PANTHER FI19922P1-RELATED 33 407 IPR045315 GO:1990542
Seca4g02505 412 Gene3D Mitochondrial carrier domain 118 411 IPR023395 -
Seca4g02505 412 Gene3D Mitochondrial carrier domain 18 117 IPR023395 -
Seca4g02505 412 SUPERFAMILY Mitochondrial carrier 40 400 IPR023395 -
Seca4g02505 412 Pfam Mitochondrial carrier protein 190 282 IPR018108 -
Seca4g02505 412 Pfam Mitochondrial carrier protein 320 406 IPR018108 -
Seca4g02505 412 Pfam Mitochondrial carrier protein 41 177 IPR018108 -
Seca4g02505 412 ProSiteProfiles Solute carrier (Solcar) repeat profile. 41 175 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02505 Seca-Chr4 42816883 42822325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02505 137 403 Organic Solute Cotransporters AT3G55640 26.007 1.02e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02505 K15119 - gmx:100778501 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02505 4 42816883 42822325 Seca4g02505 4 42816883 42822325 ECH