Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01416 ATGGCTTCGGAGAAAATCGAGCGAACTGCAATTGAAATGAACAATGAGGATACAAATTTGAGGGAACGTTCTTCTCTTCCTCCATCGCAAAAAGCATTCAAAACTCAAAATTTGGGAATCACAGAACGAACATTCTCTGCTGCAGGCGCCGCCTTCTTTTCAGTCATCATTGCCAATCCTCTCGATGTTGCCAAGACAAGGTTGCAAGCACAAGCAGCAGGGGTTCCATATTCTCATCCACTCAGTAATATGACCAGTAGAATGGCTTGTTTTGGCCCAAATATGATGTTTGCTGATTTAAGGTGTTCTCCATCATGCCACCGGGCTGGAATCCAAGGAACAGTGTCCATCTGTCCTCCTGAGTGCTTTCGCTACAAAGGAACATTGGATGTCATCTACAAAATTATACATCAGGAGGGAGTTGCTAAGCTGTGGAGAGGCACAAATGCTGGCCTGGCTCTTGCAGTACCAACTGTAGGAATTTACCTTCCTTGCTATGATATATTACGCAATTGGTTGGAGGATTTCACAGAAAAAAATGCTCCAACTACAGTTCCTTATGTACCATTAGCGGCTGGTTCATTGGCGCGCTCTCTAGCTTGTGCAACTTGCTATCCTATTGAACTTGCTAGAACTCGTATGCAGGCATTTAAAGTGACTGAAATTGATAAAAAGCCTCCTGGAGTGTTTCAGACCCTGCTTGGTGTTATGTCGCATGTCAAAAGCACAAATAATCCACAAAGTAATTTGAGAGGTTATCGTCTTTTGTGGACTGGCATGGGAGCTCAACTTGCTCGTGATGTACCCTTCTCTGCCATTTGTTGGTCCACACTTGAACCAACTAGAAGGAAACTTCTTAGTTTTGTTAGACACGATGAGGCTAATGTGTTTAGTGTTCTTGGAGCAAATTTCGGAGCTGGCTTTGTTGCTGGAACTTTAGCAGCTGGAGTTACATGTCCTTTAGATGTTGCAAAGACTCGAAGACAGATAGAGAAGGATCATATGAAGGCATTGAAAATGACGACGAGACAAACATTAATGGATGTGTGGAGAGATGGAGGCTTGAAAGGATTGTTTGCAGGTTTTGGTCCACGAGTTTGTCGATTAGGGCCTTCTGTTGGATTAGTGATTTCGTTTTACGAAGTTGTCAAGTTTGGTCTTCATCACTACAACACATCATCATGA 1185 0.4321 MASEKIERTAIEMNNEDTNLRERSSLPPSQKAFKTQNLGITERTFSAAGAAFFSVIIANPLDVAKTRLQAQAAGVPYSHPLSNMTSRMACFGPNMMFADLRCSPSCHRAGIQGTVSICPPECFRYKGTLDVIYKIIHQEGVAKLWRGTNAGLALAVPTVGIYLPCYDILRNWLEDFTEKNAPTTVPYVPLAAGSLARSLACATCYPIELARTRMQAFKVTEIDKKPPGVFQTLLGVMSHVKSTNNPQSNLRGYRLLWTGMGAQLARDVPFSAICWSTLEPTRRKLLSFVRHDEANVFSVLGANFGAGFVAGTLAAGVTCPLDVAKTRRQIEKDHMKALKMTTRQTLMDVWRDGGLKGLFAGFGPRVCRLGPSVGLVISFYEVVKFGLHHYNTSS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01416 394 PANTHER FI19922P1-RELATED 30 391 IPR045315 GO:1990542
Vian4g01416 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 184 284 IPR018108 -
Vian4g01416 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 298 386 IPR018108 -
Vian4g01416 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 172 IPR018108 -
Vian4g01416 394 Pfam Mitochondrial carrier protein 188 285 IPR018108 -
Vian4g01416 394 Pfam Mitochondrial carrier protein 38 174 IPR018108 -
Vian4g01416 394 Pfam Mitochondrial carrier protein 302 388 IPR018108 -
Vian4g01416 394 Gene3D Mitochondrial carrier domain 18 112 IPR023395 -
Vian4g01416 394 MobiDBLite consensus disorder prediction 1 28 - -
Vian4g01416 394 Gene3D Mitochondrial carrier domain 113 388 IPR023395 -
Vian4g01416 394 MobiDBLite consensus disorder prediction 1 19 - -
Vian4g01416 394 SUPERFAMILY Mitochondrial carrier 39 382 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01416 Vian-Chr4 28618098 28621671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01416 190 384 Organic Solute Cotransporters AT4G26180 24.645 8.53e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01416 K15119 - gmx:100778501 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01416 4 28618098 28621671 Vian4g01416 4 28618098 28621671 ECH