Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01988 ATGGTTGATTCGGAGAGAATTCAGAATCTATGGATGGTTCCGAAGGAAACTGCAATAGCTGGTTCCTTTATTTCGGATTCGATGGCTCCCAGACCAGATAGGAAGGAAGGCTCTCGGTTACAAATATCCGATCATAAATTAGGTATTGCAGAACGAGCGTTCTCTGCTGCTGGCGCCGCCTTTCTCTCGGCAATCATTGTTAATCCTCTTGATGTAGCTAAGACAAGGCTGCAAGCACAGGCTGCTGGAGTCACTTATTCGCATCCCCTCAGTAACATGACTAGTCGTATGGCTTGTTTTGGACCTAATATGTTGTTTGCAGATTTAAGATGTTCTCCGTCATGCACGCGGGCTGGAATCCATGGCACAGTATCAATTTGTCCTCCTGAGTGTTTTCGGTACAAAGGAACACTGGATGTCCTCTCCAAAATTGTGCAACAGGAAGGATTTTCGAGACTCTGGAGAGGCACAAATGCTGGACTTGCACTGGCAGTACCAACTGTAGGAATTTACCTTCCTTGCTATGACATATTCCGTAACTGGTTGGAAGAATTCTCAGCTGAAATTGCTCCCAGCACAACTACATATGTACCTTTTGTGGCTGGTGCATTGGCACGCTCGCTAGCTTGTGCAACTTGTTATCCTATTGAGCTTGCTAGAACTCGTATGCAGGCATTTAAAGAAACTCAAATTGGTAAAAAGCCTCCTGGAGTGTTTCAGACTCTGTTAGGTGTCGTCTCACATGGCAAGAGCTCAACTGGTCCAAATAACAGCTTGCAAGGTTATCGTGTCCTATGGACTGGCATGGGGGCTCAACTTGCTCGTGACGTGCCCTACTCAGCGATTTGTTGGTCAACCCTTGAACCATTAAGGAGAAAGCTTCTTAGTCTGGTTGGAGGTGATGATGCTAATGCGTTCAGTGTTCTAGCGGCAAACTTCTCTGCTGGGTTTGTTGCAGGAACACTGGCTGCGGGTGCTACATGTCCTCTAGATGTTGCGAAAACTCGAAGGCAGATAGAGaatGATCCAGCAAGGGCATTGAAAATGACAACGAGGCAGACCCTAATGGAGGTTTGGAGAGACGGGGGCATGAAGGGACTTTTCACCGGAGTTGGTCCACGAGTTGCTCGAGCGGGACCTTCAGTTGGAATTGTGGTTTCATTTTATGAAGTTGTAAAGTTTGTTCTACATCACAAGAACACAACAGCATG 1211 0.4666 MVDSERIQNLWMVPKETAIAGSFISDSMAPRPDRKEGSRLQISDHKLGIAERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVTYSHPLSNMTSRMACFGPNMLFADLRCSPSCTRAGIHGTVSICPPECFRYKGTLDVLSKIVQQEGFSRLWRGTNAGLALAVPTVGIYLPCYDIFRNWLEEFSAEIAPSTTTYVPFVAGALARSLACATCYPIELARTRMQAFKETQIGKKPPGVFQTLLGVVSHGKSSTGPNNSLQGYRVLWTGMGAQLARDVPYSAICWSTLEPLRRKLLSLVGGDDANAFSVLAANFSAGFVAGTLAAGATCPLDVAKTRRQIENDPARALKMTTRQTLMEVWRDGGMKGLFTGVGPRVARAGPSVGIVVSFYEVVKFVLHHKNTTA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01988 403 Gene3D Mitochondrial carrier domain 128 403 IPR023395 -
Bva12g01988 403 Gene3D Mitochondrial carrier domain 21 127 IPR023395 -
Bva12g01988 403 ProSiteProfiles Solute carrier (Solcar) repeat profile. 193 293 IPR018108 -
Bva12g01988 403 PANTHER FI19922P1-RELATED 44 400 IPR045315 GO:1990542
Bva12g01988 403 Pfam Mitochondrial carrier protein 194 294 IPR018108 -
Bva12g01988 403 Pfam Mitochondrial carrier protein 310 399 IPR018108 -
Bva12g01988 403 Pfam Mitochondrial carrier protein 47 183 IPR018108 -
Bva12g01988 403 ProSiteProfiles Solute carrier (Solcar) repeat profile. 307 395 IPR018108 -
Bva12g01988 403 SUPERFAMILY Mitochondrial carrier 47 391 IPR023395 -
Bva12g01988 403 PANTHER BNACNNG35730D PROTEIN 44 400 - -
Bva12g01988 403 ProSiteProfiles Solute carrier (Solcar) repeat profile. 47 181 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01988 Bva-Chr12 15739152 15744876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01988 142 394 Organic Solute Cotransporters AT3G55640 27.413 5.26e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01988 K15119 - gmx:100810960 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01870 08 12615595 12618186 Bva12g01988 12 15739152 15744876 ECH
Bva08g00101 08 512962 515016 Bva12g01988 12 15739152 15744876 ECH
Bva11g02176 11 17781657 17787422 Bva12g01988 12 15739152 15744876 ECH
Bva12g01988 12 15739152 15744876 Bva12g01988 12 15739152 15744876 ECH