Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1176 ATGGTGGATTCAGAGCGAATCCAAAATCAATGGATGGCTTCTGGGCAAGCATTGGTGGCTGGAATAGATGGGCAAGGCTCCTTGCTGTTGGGATGCACGGGCACGGGTGTCGGAAGAGATGGCGAGGAAAGCTCTTCTCGTATGAACCAAATATCTGCTGATGGTAAATTGGGAGTTGGAGAGCGAGCTTTCTCTGCCGCTGGCGCTGCCTTTCTCTCCGCTATCATTGTTAATCCTCTTGATGTTGCTAAGACAAGGTTGCAAGCACAGGCCGCAGGGGTCAATTATTCTCATCCACTTAGTAATATGACCAGTCGCATGGCTCATTTTGGACCTAATATGCTGTTTGCTGATTTAAGATGTTCACCATCATGTACCCGGGCAGGAATCCATGGCACAGTATCAATTTGTCCTCCTGAGTGTTTTCGGTACAAAGGAACACTGGATGTGCTCTACAAAATTGTACAACAGGAAGGATTTTCTAGGCTATGGAGAGGCACAAATGCTGCCCTGGCACTTGCAGTACCAACTGTAGGTATTTACCTTCCTTGCTATGACATATTCCGAAACTGGTTGGAGGAATTTACTGCCAAAAATGTTCCGTCCACAACTCCATATGTACCTATAGTGGCTGGATCACTGGCTCGCTCTCTAGCTTGTGCCACTTGTTATCCTATTGAGCTAGCTAGAACTCGCATGCAGGCATTTAAAGAGACTCAAATTGGTAGAAAGCCTCCTGGAGTATTCCAGACTCTACTGGGTGTTGTCTCACATGTGAAGAGCACCAGTAGTCTACAGAACAGCTTGCAAGGTTATCGTGTCTTGTGGACTGGCATGGGTTCTCAACTTGCCCGTGATGTACCCTTCTCTGCCATCTGCTGGTCAACTCTTGAACCAATTAGAAGAAAACTATTTAATCTGGTTGGAGGTGACGAAGCCAATGCAATGGGTGTCCTTGGTGCAAATTTTTCAGCTGGTTTTGTTGCAGGAAGCCTTGCAGCTGGTGCTACATGTCCGCTAGATGTTGCTAAAACACGAAGGCAGATAGAGAGGGATCCAGCCAGGGCATTGAAAATGACTACAAGGCAGACACTAATGGAGGTTTGGAGAGATGGAGGCTTGAAGGGACTCTTTACAGGTGTTGGTCCACGAGTTGGTCGGGCAGGGCCCTCCGTTGGAATTGTGGTTTCGTTTTATGAAGTTGTAAAGTTTGTTCTACATCGCCATTCCACAACATCTTGA 1242 0.471 MVDSERIQNQWMASGQALVAGIDGQGSLLLGCTGTGVGRDGEESSSRMNQISADGKLGVGERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVNYSHPLSNMTSRMAHFGPNMLFADLRCSPSCTRAGIHGTVSICPPECFRYKGTLDVLYKIVQQEGFSRLWRGTNAALALAVPTVGIYLPCYDIFRNWLEEFTAKNVPSTTPYVPIVAGSLARSLACATCYPIELARTRMQAFKETQIGRKPPGVFQTLLGVVSHVKSTSSLQNSLQGYRVLWTGMGSQLARDVPFSAICWSTLEPIRRKLFNLVGGDEANAMGVLGANFSAGFVAGSLAAGATCPLDVAKTRRQIERDPARALKMTTRQTLMEVWRDGGLKGLFTGVGPRVGRAGPSVGIVVSFYEVVKFVLHRHSTTS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1176 413 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 303 IPR018108 -
Dere04g1176 413 Gene3D Mitochondrial carrier domain 39 139 IPR023395 -
Dere04g1176 413 ProSiteProfiles Solute carrier (Solcar) repeat profile. 317 405 IPR018108 -
Dere04g1176 413 ProSiteProfiles Solute carrier (Solcar) repeat profile. 57 191 IPR018108 -
Dere04g1176 413 SUPERFAMILY Mitochondrial carrier 52 103 IPR023395 -
Dere04g1176 413 Pfam Mitochondrial carrier protein 321 408 IPR018108 -
Dere04g1176 413 Pfam Mitochondrial carrier protein 204 305 IPR018108 -
Dere04g1176 413 Pfam Mitochondrial carrier protein 57 193 IPR018108 -
Dere04g1176 413 Gene3D Mitochondrial carrier domain 140 412 IPR023395 -
Dere04g1176 413 SUPERFAMILY Mitochondrial carrier 140 401 IPR023395 -
Dere04g1176 413 PANTHER FI19922P1-RELATED 47 410 IPR045315 GO:1990542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1176 Dere-ChrDere04 13135570 13141265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1176 153 404 Organic Solute Cotransporters AT3G55640 26.357 1.62e-18 84.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1176 04 13135570 13141265 Dere04g1176 04 13135570 13141265 ECH