Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1208 . . Adu03g01399 . . . Ahy3g1285 . . . Amo03g0604 . . . . . Car06g03147 . . . . . . . . Gso6g2411 . . . . . . . . . . . . . . . . . . . Phco9g01307 . . . . . . . Ssu3g2146 . . . . . . . . . .
Pvu11g1209 . . Adu03g01401 Aed5g0847 . . Ahy13g1543 Aip03g01734 . . Amo03g0602 . Arst3g01807 . . Bva07g00201 . . . . . . Gma12g01003 . Gso12g0929 Gso6g2410 Lal1g0468 . . . . Lan13g0476 . . . . . . . . . . . . . Phco9g01310 . . . . . . . Ssu3g2148 . . . . . . . . . .
Pvu11g1210 . . . . . . . . . . . . Arst3g01804 . . . Car06g03146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g2149 . . . . . . . . Vivi5g03362 .
Pvu11g1211 . . . . Aev04g2582 . . . . . . . Arst3g01803 . . . Car06g03144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g2150 . . . . . . . . . .
Pvu11g1212 . . . . . . . . . . . . Arst3g01795 . . . Car06g03143 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01319 . . . . . . . Ssu3g2151 . . . . . . . . . .
Pvu11g1213 . . . . . . . . . . . . . . . . Car06g03142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g2152 . . . . . . Vimu5g01456 . . .
Pvu11g1214 . . . . . . . . . . . . Arst3g01793 Bach9g00493 . Bva07g02027 . Cca04g01110 . Dod03g2133 . . . Gma06g02640 . . . . . . . . . . . . . . . . . . . . . . . . . Pumo11g01093 . . Spst11g01002 Ssu3g2153 . Tpr7g4241 . . Vian5g00814 . Vimu5g01455 Viun11g01444 . Vra2g1024
Pvu11g1215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1216 . . . . . . . . . . . . Arst3g01941 . . . . . . . . . . . . . . . . . . . . Lasa7g01153 . . . . . . . . . . . . . . Pste1g03525 . . . . . . . . Tsu02g02002 . . . . . .
Pvu11g1217 . . . . . . . . . . . . . . . . . Cca04g01112 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g2154 . . . . . . . . . Vra2g1028
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1208 Chr11 18476113 18479900 +
Adu Adu03g01399 Chr03 20836209 20842865 -
Ahy Ahy3g1285 Chr3 20639208 20642937 -
Amo Amo03g0604 Chr03 11098493 11101558 +
Car Car06g03147 Chr06 57537699 57542028 -
Gso Gso6g2411 Chr6 45748275 45752551 +
Phco Phco9g01307 Chr9 14128157 14131402 +
Ssu Ssu3g2146 Chr3 70084993 70144289 +
Pvu Pvu11g1209 Chr11 18523923 18526492 +
Adu Adu03g01401 Chr03 20852473 20856538 -
Aed Aed5g0847 Chr5 6398828 6402020 +
Ahy Ahy13g1543 Chr13 22060868 22065249 +
Aip Aip03g01734 Chr03 21286180 21290649 +
Amo Amo03g0602 Chr03 11076951 11088131 +
Arst Arst3g01807 Chr3 21171319 21176782 -
Bva Bva07g00201 Chr07 3156056 3158983 -
Gma Gma12g01003 Chr12 11084564 11089123 -
Gso Gso12g0929 Chr12 10940023 10944658 -
Gso Gso6g2410 Chr6 45741823 45746422 -
Lal Lal1g0468 Chr1 2946447 2948786 -
Lan Lan13g0476 Chr13 3522651 3525989 -
Phco Phco9g01310 Chr9 14315937 14319942 +
Ssu Ssu3g2148 Chr3 70183732 70187041 +
Pvu Pvu11g1210 Chr11 18631479 18634941 +
Arst Arst3g01804 Chr3 21122767 21127086 -
Car Car06g03146 Chr06 57522452 57526176 -
Ssu Ssu3g2149 Chr3 70208673 70211962 +
Vivi Vivi5g03362 Chr5 124816839 124820989 -
Pvu Pvu11g1211 Chr11 18655713 18657045 +
Aev Aev04g2582 Chr04 25557690 25560016 -
Arst Arst3g01803 Chr3 21102739 21104827 -
Car Car06g03144 Chr06 57507328 57509460 -
Ssu Ssu3g2150 Chr3 70228090 70229293 +
Pvu Pvu11g1212 Chr11 18657432 18660432 +
Arst Arst3g01795 Chr3 21055235 21057893 -
Car Car06g03143 Chr06 57493689 57497050 -
Phco Phco9g01319 Chr9 14564605 14567051 -
Ssu Ssu3g2151 Chr3 70233767 70236156 +
Pvu Pvu11g1213 Chr11 18716159 18717422 +
Car Car06g03142 Chr06 57479256 57481955 -
Ssu Ssu3g2152 Chr3 70239333 70240224 +
Vimu Vimu5g01456 Chr5 25557117 25557970 +
Pvu Pvu11g1214 Chr11 18717452 18719982 -
Arst Arst3g01793 Chr3 21033265 21035583 +
Bach Bach9g00493 Chr9 3533845 3535818 +
Bva Bva07g02027 Chr07 17564031 17566103 -
Cca Cca04g01110 Chr04 12609837 12613019 +
Dod Dod03g2133 Chr03 50388896 50395017 -
Gma Gma06g02640 Chr06 49849555 49852185 -
Pumo Pumo11g01093 Chr11 39309622 39311942 -
Spst Spst11g01002 Chr11 34157617 34159793 -
Ssu Ssu3g2153 Chr3 70241787 70271029 -
Tpr Tpr7g4241 Chr7 51376918 51379903 +
Vian Vian5g00814 Chr5 28106870 28109088 -
Vimu Vimu5g01455 Chr5 25557020 25560324 -
Viun Viun11g01444 Chr11 30600634 30605520 -
Vra Vra2g1024 Chr2 10970819 10973264 +
Pvu Pvu11g1215 Chr11 18825122 18829892 -
Pvu Pvu11g1216 Chr11 18953485 18954923 -
Arst Arst3g01941 Chr3 22938192 22940606 -
Lasa Lasa7g01153 Chr7 207310331 207313558 -
Pste Pste1g03525 Chr1 16592052 16594283 -
Tsu Tsu02g02002 Chr02 19459447 19460693 -
Pvu Pvu11g1217 Chr11 19019417 19022405 +
Cca Cca04g01112 Chr04 12627318 12632132 -
Ssu Ssu3g2154 Chr3 70248958 70250961 +
Vra Vra2g1028 Chr2 11006778 11008269 -