Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1209 ATGACTCATGTGCAGATTTCTATCGACTCAGATGATGCAAGTTGGAGAGAGAGATGCAGCAGAAGGATGGAGGAATTGGAGAAGAGACAGTTCCAAAGTGAAGATGCAGCTTCAGAACTGCTGCATAAGGATCTTGTTGGGAAGAAAAAAGTTATGGTTTCTGAATTGTTTAACGCTGTTGATGAGAATGGAAACGTGGATAACTTCGTTGACGCGTTGCAAAGAGTGTGTGAAGGAAGGAAAGTGGCTTTGAGTGGTGTTTTTGATGAAGTTACCTGTGCTGGTGATTCACTGCTTCATGTGGCAGCGGATAAGGGGAGAGAACGGATTGTAGAGTTGATTTGTGGTCACTTTCCTGAACTTCTTATTAAGAGAAACGTGAGAGGTGATACTGCACTTCATGTTGCTGTGAGGTCCAAGAACTCAACTATAGTGAACTTCATTCTCTTCCATTATGCCATTGAGAAGAGAAAACATGATGGAATGAGAGATAAAAAGATTACAAGAGAAAAGAATAAGTACGAGAATGCCCCTTTGCATGAGGCTGTGTACAGTGGGGATGTTGGTGTGGTGAAAGTGATTTTAACTGCAGATAAGGATGTGGTTCATTGTTTGAACAAGTCAAGGAGATCACCACTGTATTTGGCTGTTGTGTATGGGAATGTGGAAATTCTTGATCTTCTGTTGGAAGTTCCATTCCCTCCTCATCAACCTCTTCCACTCTGCCTTGGAAACTCTCCACTTCATGCAGCCATATTGGAAAGGAATCCTGCTTTGATAGAAGAGATATTAAAGAAAAAAGCAGAGCTAGTTTATTTAAGAGATGAAGATGAAGGTACTCCTCTTCATTATGCAGCATACATTGGTTATGCAGAAGGATTTCGTATACTATTAGAAAATTCGTTTCAGAAATCAGATCAAACTGTGTTGGAAGGGAACAAGAAGGGTCATCTTCCTATTCACCTTGCTTGCAAAAGGGGTCATGTTAAGGTGGTAAAAGAATTTCTTCAACACAAATGTAACATTCTTCATGTTGCTGCGAAGAATGGAAAAAGTAAAGTGGTAGAATATCTGTTGGGAAATTCAAAGATTGATCAATCTATTATAAATCAGAAAGACAACAATGGAAACACTCCATTGCATTTGGCTTCAATAAGTTTATTTCCTAAAGTTCTATACCTTTTTACACAAGATGAGAGAACTGATGTGAAGCTCTCCAATAACAACGATTTAACAGCTCAAGATATCATTGGTCTGGCCATGAAAAATAAAATGACGATCCGAAAGTTTCTAGCAAGACGAGTATTAAAAGAAGCAGGTGTGCCCTCGAAGGTAAATGATAAGTTGCATTCTCAACAGAAAAAGGCAGTGAAAATGGATTTCAGCTTAAATACTCTCCTAAACACATTTTTAGTTGTGGCGACATTGATGGTGACAGTGACCTTTGCAGCTGCTTTCACTGTGCCAGGAGGTGTATACAGTTCTGAAGACGAAAACCCAAAAAATCGAGGGATGGCAGTTTTGGGTGATAAAGCATTATTCTGGGTATTCACCACCTTTAACATGATATCTATGTATAGCTCTGTCATTGCATGTGGACTTCTGTTGATGGCAATGATTTTTGATCGTAAGTTGGCAACACGAGCAACTATCCTTGCGATGGGTTGCTTGGGTTTTGCCTTCTTAACAGCACCAGTGGCATTCTTGGCTGCTGTACGTCTAGTTGTGGCTAACAATTCTGCACTTTCCTATCTTATAACTGCCATTGGAGTAATCTATAGTTCCATCATCTTGTTGGGTCTACTTTTTTCATTTTTTCCAATTGGAATTCGCCTTCCCTTATTTCGTCAACTTGGCAGATTCGTTCTTCAGATTCTGATTGCATTAATAGATTATGATGACAAGCCAAGAGATTCATCTTCTCAAGAAGAGAAGAAGGACAAGAATGATTAA 1953 0.3943 MTHVQISIDSDDASWRERCSRRMEELEKRQFQSEDAASELLHKDLVGKKKVMVSELFNAVDENGNVDNFVDALQRVCEGRKVALSGVFDEVTCAGDSLLHVAADKGRERIVELICGHFPELLIKRNVRGDTALHVAVRSKNSTIVNFILFHYAIEKRKHDGMRDKKITREKNKYENAPLHEAVYSGDVGVVKVILTADKDVVHCLNKSRRSPLYLAVVYGNVEILDLLLEVPFPPHQPLPLCLGNSPLHAAILERNPALIEEILKKKAELVYLRDEDEGTPLHYAAYIGYAEGFRILLENSFQKSDQTVLEGNKKGHLPIHLACKRGHVKVVKEFLQHKCNILHVAAKNGKSKVVEYLLGNSKIDQSIINQKDNNGNTPLHLASISLFPKVLYLFTQDERTDVKLSNNNDLTAQDIIGLAMKNKMTIRKFLARRVLKEAGVPSKVNDKLHSQQKKAVKMDFSLNTLLNTFLVVATLMVTVTFAAAFTVPGGVYSSEDENPKNRGMAVLGDKALFWVFTTFNMISMYSSVIACGLLLMAMIFDRKLATRATILAMGCLGFAFLTAPVAFLAAVRLVVANNSALSYLITAIGVIYSSIILLGLLFSFFPIGIRLPLFRQLGRFVLQILIALIDYDDKPRDSSSQEEKKDKND* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1209 650 ProSiteProfiles Ankyrin repeat profile. 208 230 IPR002110 GO:0005515
Pvu11g1209 650 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 85 162 - -
Pvu11g1209 650 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 166 594 - -
Pvu11g1209 650 Pfam Ankyrin repeats (3 copies) 57 155 IPR002110 GO:0005515
Pvu11g1209 650 Pfam Ankyrin repeats (3 copies) 213 304 IPR002110 GO:0005515
Pvu11g1209 650 Pfam Ankyrin repeats (3 copies) 320 395 IPR002110 GO:0005515
Pvu11g1209 650 SMART ANK_2a 208 237 IPR002110 GO:0005515
Pvu11g1209 650 SMART ANK_2a 128 158 IPR002110 GO:0005515
Pvu11g1209 650 SMART ANK_2a 315 344 IPR002110 GO:0005515
Pvu11g1209 650 SMART ANK_2a 375 405 IPR002110 GO:0005515
Pvu11g1209 650 SMART ANK_2a 243 272 IPR002110 GO:0005515
Pvu11g1209 650 SMART ANK_2a 94 123 IPR002110 GO:0005515
Pvu11g1209 650 SMART ANK_2a 277 306 IPR002110 GO:0005515
Pvu11g1209 650 SMART ANK_2a 174 203 IPR002110 GO:0005515
Pvu11g1209 650 ProSiteProfiles Ankyrin repeat region circular profile. 208 230 - -
Pvu11g1209 650 ProSiteProfiles Ankyrin repeat profile. 315 342 IPR002110 GO:0005515
Pvu11g1209 650 ProSiteProfiles Ankyrin repeat region circular profile. 315 342 - -
Pvu11g1209 650 Gene3D - 48 464 IPR036770 -
Pvu11g1209 650 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 85 162 - -
Pvu11g1209 650 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 166 594 - -
Pvu11g1209 650 Pfam Domain of unknown function 464 573 IPR026961 -
Pvu11g1209 650 SUPERFAMILY Ankyrin repeat 90 415 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1209 Pvu-Chr11 18523923 18526492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1209 48 605 Miscellaneous Gene Families AT1G34050 24.040 4.29e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1209 - K15503 vun:114170347 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1209 11 18523923 18526492 Pvu11g1209 11 18523923 18526492 ECH