Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2151 ATGGCGGATCGGTTCTTCCCGAACCCGATGCCCGAGTTCGTGCCCGAAACGACGCCGTCCACTCCGCAGGAACAAGAAGAAGCCCTCACGGTGGGCGACTCACTCCCGAAGCTCCTCGCCATGCCCCACGCGCCACTCTCGGAGCGTCTCAAACGCGCCGCTCTGGACCTCAAAGAAACCATAGTGATAGAAACGTGGGGGGTATCCGGGCAGCACGTGCCGGACTTCACTCTCTACTGCGGCCTTCTGGGCACCGCTTTTCTGCTCTTCAAGTCTTACCAGGTGACCGGCAACGGGAACGACCTTTCTCTCTGCTCCCAGATTGTGAAGGCTTGCGATGCCGCTTCTGTTCGTTCGAGGGACGTTACTTTCATTTGCGGGCGTGCTGGTGTGTGCTCTCTCGGGGCCGTCGCTGCAAAACGCGCCGGTGATGACGAGTCCGTGAGGTACTACTTGGCTCAGTTCGAAAAGATTAAGCTGCCAAAAGATCTTCCTGACGAGTTGTTGTATGGGAGAGTTGGTGTTCTATGGGCGTGTTTgttcttaaacaagcaccttggTCAGGGGACAGTTCCTTCCAATTATACTGCTATGATTGTGGATGAAGTCATTAAAAACGGAAGGGCGTTGGGTAGGAAGGGAAGATGCCCATTGATGTTTGAATGGTATGGAGAGAAGTATTGGGGTGCTGCACATGGATTGGCTGGGATTATGCATGTGCTGATGGACATGGAGTTGAAGCCAGATGAGCTTGAGGACGTTAGGGGAACTCTCAAGTACATGATAAGCAATCGCTTTCCCAGTGGAAACTATCCTGCTACTGAAGAAGATAGGAAGATGGACGTCCTTGTCCACTGGTGTCATGGTGCTCCTGGAATGGCCCTCACACTTGTCAAAGCAGCTAAGGTGATAGATAGCTTGTACTCACTCGATAAGATATGTTTTCTCAATGAAATCAATGTGAtcatgagaaatgctagcaacacactctattattag 999 0.4945 MADRFFPNPMPEFVPETTPSTPQEQEEALTVGDSLPKLLAMPHAPLSERLKRAALDLKETIVIETWGVSGQHVPDFTLYCGLLGTAFLLFKSYQVTGNGNDLSLCSQIVKACDAASVRSRDVTFICGRAGVCSLGAVAAKRAGDDESVRYYLAQFEKIKLPKDLPDELLYGRVGVLWACLFLNKHLGQGTVPSNYTAMIVDEVIKNGRALGRKGRCPLMFEWYGEKYWGAAHGLAGIMHVLMDMELKPDELEDVRGTLKYMISNRFPSGNYPATEEDRKMDVLVHWCHGAPGMALTLVKAAKVIDSLYSLDKICFLNEINVIMRNASNTLYY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2151 332 Gene3D - 1 327 IPR012341 GO:0005975
Ssu3g2151 332 PANTHER LANC-LIKE PROTEIN GCL2 1 305 - -
Ssu3g2151 332 SUPERFAMILY LanC-like 68 313 - -
Ssu3g2151 332 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2151 332 CDD euk_LANCL 78 303 - -
Ssu3g2151 332 SMART LANC_like_2 72 332 IPR007822 -
Ssu3g2151 332 PANTHER LANC-LIKE PROTEIN 1 305 - -
Ssu3g2151 332 PRINTS Eukaryotic LanC-like protein family signature 216 228 IPR020464 -
Ssu3g2151 332 PRINTS Eukaryotic LanC-like protein family signature 262 277 IPR020464 -
Ssu3g2151 332 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Ssu3g2151 332 PRINTS LanC-like protein superfamily signature 75 93 IPR007822 -
Ssu3g2151 332 PRINTS LanC-like protein superfamily signature 166 181 IPR007822 -
Ssu3g2151 332 PRINTS LanC-like protein superfamily signature 227 243 IPR007822 -
Ssu3g2151 332 PRINTS LanC-like protein superfamily signature 283 303 IPR007822 -
Ssu3g2151 332 Pfam Lanthionine synthetase C-like protein 75 319 IPR007822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2151 Ssu-Chr3 70233767 70236156 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2151 - - gmx:100803464 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2151 3 70233767 70236156 Ssu3g2151 3 70233767 70236156 ECH