Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1198 . . . . . . . . . Amo13g2090 . . Arst3g01968 . . . . . . . . . . . . . . . Lal9g0445 . . . . Lasa7g02619 . . . . . . Mepo2g02771 Mesa13g02294 . Mtr4g2506 . . . . . . . . . Ssu3g2076 . . Trre7g02056 . . . . . Vivi5g03374 .
Pvu11g1199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1200 . . . . . . . . . Amo13g2094 . . Arst3g01969 . . . . . . . . . . . . . . Lal2g0497 Lal9g0447 Lan7g0512 . . . . . . . . . . Mepo2g02774 . . Mtr4g2508 . . . . . . . . . Ssu3g2075 . . Trre7g02057 . . . . . . .
Pvu11g1201 . . . . . . . . . . . . Arst3g01971 . . . . . . . . . . . . . . Lal2g0499 . Lan7g0514 . . . . . . . . . . Mepo2g02775 . . Mtr4g2509 . . . . . . . . . Ssu3g2074 . . Trre7g02062 . . . . . Vivi5g03376 .
Pvu11g1202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1203 . . . . . . . . . Amo13g2098 . . Arst3g01973 . . . . . . . . . . . . . . Lal2g0501 Lal9g0448 Lan7g0516 . . . Lasa7g02626 . . . . . . . . . . . . . . . . . . . Ssu3g2071 . . . . . . . . Vivi5g03378 .
Pvu11g1204 . . . . . . . . . Amo13g2099 . . Arst3g01974 . . . . . . . . . . . . . . Lal2g0502 Lal9g0449 Lan7g0518 . . . Lasa7g02627 . . . . . . . . . . . . . . . . . . . Ssu3g2070 . . . . . . . . Vivi5g03380 .
Pvu11g1205 . . . . . . . . . Amo13g2102 . . Arst3g01975 . . . . . . . . . . . . . . Lal2g0503 . Lan7g0519 . . . Lasa7g02628 . . . . . . . . . . . . . . . . . . . Ssu3g2069 . . . . . . . . Vivi5g03381 .
Pvu11g1206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1207 Acco08g0711 Accr13g00709 . Aed5g0904 . . Ahy13g1541 Aip03g01731 Alju10g0716 . . . Arst3g01811 . Bisa02g3272 . Car06g03149 . Dere07g0374 . Enph8g0605 Glsi04g0773 Gma12g00997 . Gso12g0924 Gso6g2413 Lal1g0469 . . . . Lan13g0477 . . . Lele30g0864 . Lele32g0525 . . . . . . . Phco9g01306 Prci6g0879 . . . . . . Ssu3g2145 Sto12g0629 Tpr4g1316 . Tsu06g01081 . . . . Vivi5g01695 .
   
Previous Page 2695 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1198 Chr11 18043312 18056248 -
Amo Amo13g2090 Chr13 33272327 33283240 -
Arst Arst3g01968 Chr3 23312559 23323099 -
Lal Lal9g0445 Chr9 2924582 2940803 -
Lasa Lasa7g02619 Chr7 535576390 535588596 -
Mepo Mepo2g02771 Chr2 37479335 37492102 -
Mesa Mesa13g02294 Chr13 26749778 26762982 -
Mtr Mtr4g2506 Chr4 38611892 38625334 -
Ssu Ssu3g2076 Chr3 68425530 68439441 +
Trre Trre7g02056 Chr7 16261047 16277947 -
Vivi Vivi5g03374 Chr5 125012942 125023301 -
Pvu Pvu11g1199 Chr11 18143364 18145104 -
Pvu Pvu11g1200 Chr11 18195659 18196246 -
Amo Amo13g2094 Chr13 33326228 33327887 +
Arst Arst3g01969 Chr3 23403830 23404540 +
Lal Lal2g0497 Chr2 2993410 2994096 +
Lal Lal9g0447 Chr9 2945447 2946013 +
Lan Lan7g0512 Chr7 3775578 3777411 +
Mepo Mepo2g02774 Chr2 37512789 37515524 +
Mtr Mtr4g2508 Chr4 38658292 38661500 +
Ssu Ssu3g2075 Chr3 68392459 68393548 -
Trre Trre7g02057 Chr7 16288643 16290625 +
Pvu Pvu11g1201 Chr11 18257872 18259683 +
Arst Arst3g01971 Chr3 23407232 23408657 +
Lal Lal2g0499 Chr2 3000499 3004321 +
Lan Lan7g0514 Chr7 3784483 3788526 +
Mepo Mepo2g02775 Chr2 37517997 37522582 +
Mtr Mtr4g2509 Chr4 38664867 38669999 +
Ssu Ssu3g2074 Chr3 68361535 68363444 -
Trre Trre7g02062 Chr7 16313074 16314653 +
Vivi Vivi5g03376 Chr5 125039056 125042421 +
Pvu Pvu11g1202 Chr11 18261153 18261680 +
Pvu Pvu11g1203 Chr11 18326978 18330255 +
Amo Amo13g2098 Chr13 33394746 33398581 +
Arst Arst3g01973 Chr3 23588216 23590550 +
Lal Lal2g0501 Chr2 3008054 3011831 +
Lal Lal9g0448 Chr9 2947703 2951039 +
Lan Lan7g0516 Chr7 3793717 3797399 +
Lasa Lasa7g02626 Chr7 536087208 536088864 +
Ssu Ssu3g2071 Chr3 68347080 68349420 -
Vivi Vivi5g03378 Chr5 125074523 125077437 +
Pvu Pvu11g1204 Chr11 18404818 18407157 -
Amo Amo13g2099 Chr13 33402893 33406090 -
Arst Arst3g01974 Chr3 23597010 23599828 -
Lal Lal2g0502 Chr2 3013783 3016101 -
Lal Lal9g0449 Chr9 2955725 2958007 -
Lan Lan7g0518 Chr7 3800571 3803042 -
Lasa Lasa7g02627 Chr7 536238833 536241130 -
Ssu Ssu3g2070 Chr3 68333665 68336163 +
Vivi Vivi5g03380 Chr5 125089330 125090598 -
Pvu Pvu11g1205 Chr11 18420395 18421932 -
Amo Amo13g2102 Chr13 33429247 33430830 +
Arst Arst3g01975 Chr3 23616830 23618202 +
Lal Lal2g0503 Chr2 3017451 3019930 +
Lan Lan7g0519 Chr7 3805598 3807282 +
Lasa Lasa7g02628 Chr7 536324784 536325951 +
Ssu Ssu3g2069 Chr3 68312889 68317372 -
Vivi Vivi5g03381 Chr5 125098946 125100502 +
Pvu Pvu11g1206 Chr11 18438525 18440129 +
Pvu Pvu11g1207 Chr11 18474360 18475576 +
Acco Acco08g0711 Chr08 6320971 6321654 -
Accr Accr13g00709 Chr13 7868592 7869281 -
Aed Aed5g0904 Chr5 6876791 6880454 -
Ahy Ahy13g1541 Chr13 21972805 21976853 -
Aip Aip03g01731 Chr03 21217177 21220578 -
Alju Alju10g0716 Chr10 6063724 6064387 -
Arst Arst3g01811 Chr3 21192544 21194988 -
Bisa Bisa02g3272 Chr02 82157160 82158203 +
Car Car06g03149 Chr06 57561129 57562927 -
Dere Dere07g0374 Chr07 6677872 6678591 +
Enph Enph8g0605 Chr8 14705071 14706784 +
Glsi Glsi04g0773 Chr04 5470685 5471596 -
Gma Gma12g00997 Chr12 10979089 10980617 -
Gso Gso12g0924 Chr12 10822743 10824351 -
Gso Gso6g2413 Chr6 45763278 45764258 -
Lal Lal1g0469 Chr1 2949728 2952509 -
Lan Lan13g0477 Chr13 3526072 3526838 -
Lele Lele30g0864 Chr30 12612288 12613036 +
Lele Lele32g0525 Chr32 3289378 3290125 -
Phco Phco9g01306 Chr9 14125658 14126702 +
Prci Prci6g0879 Chr6 5974933 5975814 -
Ssu Ssu3g2145 Chr3 70082567 70083558 +
Sto Sto12g0629 Chr12 3983398 3984245 -
Tpr Tpr4g1316 Chr4 12698374 12701006 +
Tsu Tsu06g01081 Chr06 9828755 9830157 +
Vivi Vivi5g01695 Chr5 59123490 59124318 +