Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2146 atgGTGAGGGTGTTGAGAAGTTGCATTCAATCGATATTGAAGCTGGTGAACTCGGTGATTGGGATGGCTGGGCTAGCCATGATTCTATACTCCGCATGGATGATTAGGGTATGGCAAAGACAAATGGGTGAACTTCCCTTTGGTCACGATTCTGATTACCCACCTCCGTGGTTCATTTATACATTTCTTGGCCTTGGAGTTATGTTCTGTGTAATCAGTTGTTTGGGCCATGTTGCTGCTGAAACTGCTAATGGCTGTTGCGTATATTTGTATATGGTGTTTGTGGTTTTGATTCTCATGCTGGAGGCTGCAGTAACTGTTGATGTATTTCTCAACCAGGACTGGGAGAAGGACTTCCCAAAGGACCCCTCAGGGAGTTTTGATCAGTTCAAGAATTTTATCAGATCAAATTATGAGATGTGCAAATGGGTAGGCCTGTCACTTGTTTCTATACAGggactctctttattattggcaaTGATACTCAAAGCACTAGGGCCACATCAATATTATGACAGTGATGATGAATATACTCCTGACAGGGTGCCACTCTTGAAGAATGCTCCACCTCAATATGTTGTTGTTGATCCAGGATATGCTCATGGACCTAAAAATGATGCATGGAGTAGGGTAAGCGACAAGACAAATAGGTAA 654 0.4144 MVRVLRSCIQSILKLVNSVIGMAGLAMILYSAWMIRVWQRQMGELPFGHDSDYPPPWFIYTFLGLGVMFCVISCLGHVAAETANGCCVYLYMVFVVLILMLEAAVTVDVFLNQDWEKDFPKDPSGSFDQFKNFIRSNYEMCKWVGLSLVSIQGLSLLLAMILKALGPHQYYDSDDEYTPDRVPLLKNAPPQYVVVDPGYAHGPKNDAWSRVSDKTNR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2146 217 PANTHER TETRASPANIN 3 194 IPR018499 GO:0016021
Ssu3g2146 217 Pfam Tetraspanin family 12 115 IPR018499 GO:0016021
Ssu3g2146 217 PANTHER TETRASPANIN-19 3 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2146 Ssu-Chr3 70084993 70144289 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2146 - - aprc:113858288 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2146 3 70084993 70144289 Ssu3g2146 3 70084993 70144289 ECH