Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2410 ATGGACCAACTGAGAATTGATGTTGATACAGCTTCACAAGTGGGACTACTGCATAAGGAAATTGTTGGAAAAGCTATGATTTACAAGTTGTATGAAGCTGTTAAAGAAGGACATGGTGCTAGCTTTGTTATGGTGTTGAAGCAACAATCTGAGGAAAATAAGCTACGTTTGTCTGATGTTTTTGATAAAGTCACCATAGCAGGTGATTCACTGCTTCATGTGGCAGCAGATTTGGGGAAAGAAATGATTGTGGGGAGGATTTGTGATCTCTTTCCTTTGCTTCTAATTAGGAGAAATGTAAGAGGTGACACTCCACTTCATGTTGCTGCGAGGTCTAAGAAATATGAGACAGTCAAGTTGATTCTCTCCCAATATGCCACAAAGCAGTCAACATATGATGAGATGAAAGATAAAAAGATAACAAGAGAAACAAATGAATGTGGGAATACTCCTTTGCACGAGGCTGTCTACAGTGGGGATGTTGATGTGGTTAAAGAGATTTTCGACCAGGATAAGGCTGTAGTCCATTGTTTGAACAAGTCAAAGAGATCACCACTGTGTTCGGCAGTGGTGAATGGTAATGAGCAAATTCTCTCACTTCTGTTGCAAATTCCATTACCTGCGGACCAGCCGCTTTCACAGTGTCGTCGAAGTTCTCCACTCCACACAGCTATACAGCATCAAAAAAGAGTTATGATACAAGCGATAATAGAAATAAGGCCTGAGCTAGTTTATTTAAGGGATGAAGACGGAAATACTCCCCTTCATTATGCAGTTGACATTGGTTATGTTGACGGATTTCGTATTTTATTTAAAAATTCATTGCTAAATAAATTGGATCAAACTGCCTTGGAACGAAACAAGAAGGGCCATCTTCCCCTTCATCTTGCTTGCAAAAGGGGTTGTGTTGAGATGGTAAAAGAATTCTTTGAACCTGGATCCGGATGGCCCATTAATCCTTATGTTCTCCTCAATCAAAAGGGTCAAAACATTCTTCACATTGCGGCAAAGAATGGAAGAGATAATGTGGTAGAATACCTACTAGGAAATTGCAACACTGGTGATCTACATATAAACCAGAAAGACTATGATGGGAACACTCCATTGCATTTGGCTTCCAAAAATTTATTTCAGCAAGTTATCAGCTTGATCACAGAGGATAAGAGGACTGATCTGAATCTCACGAATGAAGACGGTTTAACGGCTGGTGATATCAGTAAGACCTTTGAACATCCAATGTTGCGTGGAAGAGAGATTTTATCCATGGAGTTATCAAAAGGAGCTGGAGTCCCTGTAAATCACATGTTGCATTCTCAACGCCAACCACAGCCTGAAAAAGACACCTCTGATTTTCAACGCAAATCACTGTCTGAAAAAGACACCCGTGAGGCATTTTTGATTGTTGCAGCGTTGTTGATGACAGTGTCATTTGCAGCTGGTTTTACTGTACCGGGAGGTCTATATAGCTCTGATGACCCAAACCCTAAAATTAGAGGAACTGCAGTTTTTGCTGGTGATCCAGGATTCTGGATATTCATCATCTTCAATACCATAACTATGTATAGCTCTGCAATGGCATGTGGACTTCTGTCTGTGGGAATAGTTAATCAGTCTAAATTAACTCGTAACATTCATTTTCCGCACTTGTTTTTGACATGTGCCTTTCTGGCAGCATCAGTGGCCTTTTTGTCTGCTGTAGCTCTAGTTGTGGCCAGTAACCGTTTACTCGCAGGTGCTACAATCCTCATTGGAGCCTTTCACTATATCCTCTACATTTTTCTAATAAAATAA 1791 0.4042 MDQLRIDVDTASQVGLLHKEIVGKAMIYKLYEAVKEGHGASFVMVLKQQSEENKLRLSDVFDKVTIAGDSLLHVAADLGKEMIVGRICDLFPLLLIRRNVRGDTPLHVAARSKKYETVKLILSQYATKQSTYDEMKDKKITRETNECGNTPLHEAVYSGDVDVVKEIFDQDKAVVHCLNKSKRSPLCSAVVNGNEQILSLLLQIPLPADQPLSQCRRSSPLHTAIQHQKRVMIQAIIEIRPELVYLRDEDGNTPLHYAVDIGYVDGFRILFKNSLLNKLDQTALERNKKGHLPLHLACKRGCVEMVKEFFEPGSGWPINPYVLLNQKGQNILHIAAKNGRDNVVEYLLGNCNTGDLHINQKDYDGNTPLHLASKNLFQQVISLITEDKRTDLNLTNEDGLTAGDISKTFEHPMLRGREILSMELSKGAGVPVNHMLHSQRQPQPEKDTSDFQRKSLSEKDTREAFLIVAALLMTVSFAAGFTVPGGLYSSDDPNPKIRGTAVFAGDPGFWIFIIFNTITMYSSAMACGLLSVGIVNQSKLTRNIHFPHLFLTCAFLAASVAFLSAVALVVASNRLLAGATILIGAFHYILYIFLIK* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2410 596 Gene3D - 319 414 IPR036770 -
Gso6g2410 596 Gene3D - 16 130 IPR036770 -
Gso6g2410 596 ProSiteProfiles Ankyrin repeat region circular profile. 101 126 - -
Gso6g2410 596 ProSiteProfiles Ankyrin repeat profile. 250 274 IPR002110 GO:0005515
Gso6g2410 596 SMART ANK_2a 250 280 IPR002110 GO:0005515
Gso6g2410 596 SMART ANK_2a 101 130 IPR002110 GO:0005515
Gso6g2410 596 SMART ANK_2a 147 177 IPR002110 GO:0005515
Gso6g2410 596 SMART ANK_2a 181 210 IPR002110 GO:0005515
Gso6g2410 596 SMART ANK_2a 216 245 IPR002110 GO:0005515
Gso6g2410 596 SMART ANK_2a 364 394 IPR002110 GO:0005515
Gso6g2410 596 SMART ANK_2a 289 322 IPR002110 GO:0005515
Gso6g2410 596 SMART ANK_2a 327 358 IPR002110 GO:0005515
Gso6g2410 596 SMART ANK_2a 67 96 IPR002110 GO:0005515
Gso6g2410 596 ProSiteProfiles Ankyrin repeat region circular profile. 250 274 - -
Gso6g2410 596 ProSiteProfiles Ankyrin repeat profile. 289 314 IPR002110 GO:0005515
Gso6g2410 596 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 92 587 - -
Gso6g2410 596 ProSiteProfiles Ankyrin repeat profile. 147 169 IPR002110 GO:0005515
Gso6g2410 596 ProSiteProfiles Ankyrin repeat region circular profile. 289 314 - -
Gso6g2410 596 Pfam Domain of unknown function 459 568 IPR026961 -
Gso6g2410 596 Gene3D - 131 318 IPR036770 -
Gso6g2410 596 ProSiteProfiles Ankyrin repeat profile. 327 348 IPR002110 GO:0005515
Gso6g2410 596 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Gso6g2410 596 Pfam Ankyrin repeats (many copies) 103 165 IPR002110 GO:0005515
Gso6g2410 596 ProSiteProfiles Ankyrin repeat region circular profile. 327 348 - -
Gso6g2410 596 ProSiteProfiles Ankyrin repeat region circular profile. 147 169 - -
Gso6g2410 596 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 92 587 - -
Gso6g2410 596 SUPERFAMILY Ankyrin repeat 62 405 IPR036770 -
Gso6g2410 596 Pfam Ankyrin repeats (3 copies) 294 396 IPR002110 GO:0005515
Gso6g2410 596 Pfam Ankyrin repeats (3 copies) 218 273 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2410 Gso-Chr6 45741823 45746422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2410 101 595 Miscellaneous Gene Families AT5G60070 27.063 4.95e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2410 - - gmx:100807943 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0929 12 10940023 10944658 Gso6g2410 6 45741823 45746422 GST