Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01003 ATGGAGGAACTGAAGAACACACAATTCTCAAGTCAAGAGGCAGCAGCTTCTTCACAACCGGTGAGACTATTATTGCATAAGGAACTTGTTGGAAAAGTTATGGTTCGCGAGTTGTACAATGCTGTTGAAGATGGGAATGTGGATAACTTTGTTGGGGTTTTGAATCAACAATGCAGAAAAAGGAAACTATCTTTGTCTGATATTTTTTATCAAGTCACTGGAGCAGGTGATTCATTGCTTCACGTGGCAGCATATCATAAGGGAGAGCATATTGCTGAGCTGATTGCCCATCATTTTCCTGAGCTTCTTATTAGGAGAAACGTAAGAGGAGATACTCCACTTCATGTTGCTGTGAGGTCCAAGAACTCTACTATAGTCAACATCATTCTCTCACAATATGCCATAGAGAAGTCAAACCATGAAGAGATGAATGATAAAGAGATAACAAGAGAAACAAATGAACATGGGGATACTCCTTTGCACGAGGCTATCCACAGTGGGGATGTTGATGTGATAAAGGAGATTTTTTGTGCAGATAATGATGTGGTTCATTATTTGAACAAGTCAAGGCGATCACCACTGTATTTGGCAGTAGTGAATGGGAATGTGGAAATTCTGAATCTTCTATTGGAAATTCCATTCCCTGTGGATCTTCCACAGTGCCTTGGAAACTCTCCACTCCATGCAGCCCTGTTAGAACGGAAATCTGATCTAATAAATGGGATACTAGCAAAAAGACCAGAACTAGTTTACTTAAGAGATGAAGATGGAGGTACTCCCCTTCATTATGCAGCTTATATCGGTTATGTTGAGGGATTTCATATACTCTTAGAAAATTCAATTGATAGTTCAAATCAAACTGCCTTGGAAGGGAACAAAAAGGGTCATCTTCCTATTCACCTTGCTTGCAAAAAGGGTCATGTTAGGGTGATAAATGATTTTCTTCAACATGAATGGCCTATTAATCTTCTCCTCAACCAAAAATGTCAAAACATTCTTCATGTTGCAGCGAAAAATGGAAAAAGTAAAGTGGTACAATACCTATTGAAAAATTCGAAGATCGACCAATTTACTATAAACCAGAAAGACAATGATGGAAACACTGCATTGCATTTGGCTTCAATAAATTTGTTTCCTAAAGTTTTGTACTTCATCACTCAAGATAAGAAGACTGATGTTAACTGCTCGAATAACGACGGCTTTACGGCTCGGGATATCGTTCATCTAGCTTCGAAAAAGCAAATGACAATTCGAAAGTTCCTTGCTAATCTAGTATTAAAAGAAGCTGGTGCCCTCCTAAAAGTAAATGATATGTTGAGTTCTCAATGGCAACAATCGCCCAGAATGCAATTGAGCTTAAAAGATCTCATCAACACATTTTTAGTTGTGGCAACGTTGATGGTCACTGTGACATTTGCTGCTGGTTTCACTGTGCCTGGAGGCGTATATAGTTCAGATGCTAAAGACCCAAAAAATATAGGGATGGCAATTTTGGCTGATAAACCATTTTTTTGGGTATTCACCACCTTCAACATGATAGCTATGTATAGCTCTGTTATTGCATGTGGACTCATGTTGATGGCACTGATTTTTGATCATAAATTGGCAACAGGAGCAACTATCCTTGCAATGTGTTGTTTGGTTCTTGCCTTTTCAACCGTACCAATTGCATTTATGGCTGCAGTACATCTAGTTGTGGCCAACAACTATGCTCTTTCCCGTACTATTATTGTCATTGGAGTTGTGTACACTTCCCTCATCTTGTTGGGTTTATTTTTTGGATTTTTTCCAATTGGAATTCGCCTTCTTCTATTTCGTCATGTTGGTAGACTCGTTCTTCGGATTCTAATTGCATTGACAAAATATGATGATAGGCCTGAAGATTCATTGCCTCAGAAAGAAAACAATGACAAGGATGATTAA 1923 0.3859 MEELKNTQFSSQEAAASSQPVRLLLHKELVGKVMVRELYNAVEDGNVDNFVGVLNQQCRKRKLSLSDIFYQVTGAGDSLLHVAAYHKGEHIAELIAHHFPELLIRRNVRGDTPLHVAVRSKNSTIVNIILSQYAIEKSNHEEMNDKEITRETNEHGDTPLHEAIHSGDVDVIKEIFCADNDVVHYLNKSRRSPLYLAVVNGNVEILNLLLEIPFPVDLPQCLGNSPLHAALLERKSDLINGILAKRPELVYLRDEDGGTPLHYAAYIGYVEGFHILLENSIDSSNQTALEGNKKGHLPIHLACKKGHVRVINDFLQHEWPINLLLNQKCQNILHVAAKNGKSKVVQYLLKNSKIDQFTINQKDNDGNTALHLASINLFPKVLYFITQDKKTDVNCSNNDGFTARDIVHLASKKQMTIRKFLANLVLKEAGALLKVNDMLSSQWQQSPRMQLSLKDLINTFLVVATLMVTVTFAAGFTVPGGVYSSDAKDPKNIGMAILADKPFFWVFTTFNMIAMYSSVIACGLMLMALIFDHKLATGATILAMCCLVLAFSTVPIAFMAAVHLVVANNYALSRTIIVIGVVYTSLILLGLFFGFFPIGIRLLLFRHVGRLVLRILIALTKYDDRPEDSLPQKENNDKDD 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01003 640 ProSiteProfiles Ankyrin repeat region circular profile. 155 182 - -
Gma12g01003 640 ProSiteProfiles Ankyrin repeat profile. 155 182 IPR002110 GO:0005515
Gma12g01003 640 Pfam Ankyrin repeats (3 copies) 39 134 IPR002110 GO:0005515
Gma12g01003 640 Pfam Ankyrin repeats (3 copies) 194 282 IPR002110 GO:0005515
Gma12g01003 640 Gene3D - 291 441 IPR036770 -
Gma12g01003 640 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 70 132 - -
Gma12g01003 640 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 144 584 - -
Gma12g01003 640 ProSiteProfiles Ankyrin repeat profile. 256 288 IPR002110 GO:0005515
Gma12g01003 640 Pfam Domain of unknown function 453 564 IPR026961 -
Gma12g01003 640 SMART ANK_2a 189 218 IPR002110 GO:0005515
Gma12g01003 640 SMART ANK_2a 365 395 IPR002110 GO:0005515
Gma12g01003 640 SMART ANK_2a 109 139 IPR002110 GO:0005515
Gma12g01003 640 SMART ANK_2a 222 251 IPR002110 GO:0005515
Gma12g01003 640 SMART ANK_2a 294 323 IPR002110 GO:0005515
Gma12g01003 640 SMART ANK_2a 75 104 IPR002110 GO:0005515
Gma12g01003 640 SMART ANK_2a 155 184 IPR002110 GO:0005515
Gma12g01003 640 SMART ANK_2a 256 285 IPR002110 GO:0005515
Gma12g01003 640 SMART ANK_2a 328 356 IPR002110 GO:0005515
Gma12g01003 640 ProSiteProfiles Ankyrin repeat profile. 189 211 IPR002110 GO:0005515
Gma12g01003 640 SUPERFAMILY Ankyrin repeat 73 174 IPR036770 -
Gma12g01003 640 Pfam Ankyrin repeats (many copies) 315 373 IPR002110 GO:0005515
Gma12g01003 640 ProSiteProfiles Ankyrin repeat region circular profile. 189 211 - -
Gma12g01003 640 SUPERFAMILY Ankyrin repeat 156 409 IPR036770 -
Gma12g01003 640 Gene3D - 32 132 IPR036770 -
Gma12g01003 640 Gene3D - 133 290 IPR036770 -
Gma12g01003 640 ProSiteProfiles Ankyrin repeat profile. 109 134 IPR002110 GO:0005515
Gma12g01003 640 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 70 132 - -
Gma12g01003 640 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 144 584 - -
Gma12g01003 640 ProSiteProfiles Ankyrin repeat region circular profile. 109 134 - -
Gma12g01003 640 ProSiteProfiles Ankyrin repeat region circular profile. 256 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01003 Gma-Chr12 11084564 11089123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01003 99 608 Miscellaneous Gene Families AT5G54710 23.713 3.28e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01003 - - gmx:102660446 1224.54