Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4390 ATGAATAGGGTATACAACCTACATGCTACACTGATCAAAACCGGCCAACACAACAACCCCCTCTCTCTCCGAACCTTCTTCCTCCGCTGCGCAGAGTTACCGTCCGCCGACACCGCAAGCTATGCCGCCGCCGTGTTGCTCCGCTTCCCCATACCCGACCCGACCCCCTACAACACCGTCATCCGACACCTGGCACTCCACTCTCCCACCCTTGCCACCACCCTCTTCTCCCACATGCACCGAACCGGCGTCACCGTCGACCACTTCACCTTCCCCCTCATCCTCCGACACTCCCTCCCTCGCCTGAAACCCCACCACCTCCACCCCCTCATTCTCAAGCTTGGCTTCGCTTCCAACATCTTCGTCCAGAACGCACTCATCAATGCATACGGTTCTTCTGGCTCCCTCAACCTGGCAGTGCACCTGTTCGATGAAATGCCCCAGAGGGACCTGGCTTCTTGGTCCACCTTGATTGTTTGTTTCACCAACAACGGTTACCCTGCTGAAGCCCTTTCACTTTTCCAACAAATGCAGCTGGGTGACCCTCAGGTTCCGGAATCCACTGATGGGGTTATGATGCTGAGCGTGATATCCGCAGTTTCGAGCTTAGGTGCTTTGGAATTGGGCATCTGGGTTCATGCTTATATTCGTAGGGCTGGGCTTGGCCTTACTGTTCCGCTCGGTACTGCTCTTATTAACATGTACTCGAGATGTGGGTCGATTGATCGTTCGGTCAAGGTGTTCGAGGAAATGCCGCATAGGAACGTGGTTACGTGGACCTCGTTGATTACTGGCCTTGCGGTTCATGGTCGTAGCAGGGAAGCTCTGAGAGCGTTTCGTGACATGAGGGAGGCTGGTTTGAGGCCTGACGGTGCTGCGTACACCGCTGCGTTGGTGGCTTGTAGTCATGGCGGTCTTGTGGAGGATGGGTGGCGGGTTTTCGAGAGCATGCGGAGTGAGTATGGCGTTTATCCCATGCTTGAGCATTATGGTTGCATGGTTGACCTTCTTGGCCGTGCTGGGATGCTCCTTGAAGCTTTTAAATTCGTGGAGGATATGCCTATCAAGCCAAACTCTGTCATTTGGAGGACCTTGCTTGGGGCGTGTGTGAACCACAATGATCTTGTGTTAGCTGAGAAGGCCAAGGAGAGGGTCAATGAGCTGGACCCTCATCATGATGGTGATTATGTGCTTTTATCCAATGCATATGGTGGAGTTGGTAACTGGGGTGGGAAGGCTGGCGTGAGAAATTCTATGAGGGAGAATAGAATTGTGAAGGAGCCTGGCCTTAGTGTGGTTCACATTGATCAAGTGGTTCATGAGTTTGTATCTGGAGATAATTCTCATCCACAATGGGAGGAGATTATGAAGTTTTTAGTTTCAGTCGTAGATACCATAAAACTTGGAGGTTATGCCCCTAACACGTCCTCTGTGCTACATGATATTCAGGAGGAAGAGAAAGAGCATAGTCTGGGCTATCATAGTGAGAAATTGGCTGTGGCTTTTGTGCTTCTTTATCACAGGGATAGGAAGGCCATTAGGGTCATCAAGAATCTTAGGATTTGTTATGACTGTCATAGTTTCATGAAGCATGTTTCAGGTATCTTTGACAAAGATATAATTATTAGGGATCGAAATCGGTTCCATCATTTTAGCAAGGGATCATGTTCTTGCGGAGATTTTTGGTAA 1689 0.5033 MNRVYNLHATLIKTGQHNNPLSLRTFFLRCAELPSADTASYAAAVLLRFPIPDPTPYNTVIRHLALHSPTLATTLFSHMHRTGVTVDHFTFPLILRHSLPRLKPHHLHPLILKLGFASNIFVQNALINAYGSSGSLNLAVHLFDEMPQRDLASWSTLIVCFTNNGYPAEALSLFQQMQLGDPQVPESTDGVMMLSVISAVSSLGALELGIWVHAYIRRAGLGLTVPLGTALINMYSRCGSIDRSVKVFEEMPHRNVVTWTSLITGLAVHGRSREALRAFRDMREAGLRPDGAAYTAALVACSHGGLVEDGWRVFESMRSEYGVYPMLEHYGCMVDLLGRAGMLLEAFKFVEDMPIKPNSVIWRTLLGACVNHNDLVLAEKAKERVNELDPHHDGDYVLLSNAYGGVGNWGGKAGVRNSMRENRIVKEPGLSVVHIDQVVHEFVSGDNSHPQWEEIMKFLVSVVDTIKLGGYAPNTSSVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKAIRVIKNLRICYDCHSFMKHVSGIFDKDIIIRDRNRFHHFSKGSCSCGDFW* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4390 562 Gene3D Tetratricopeptide repeat domain 186 305 IPR011990 GO:0005515
Lja1g4390 562 TIGRFAM PPR: pentatricopeptide repeat domain 229 256 IPR002885 -
Lja1g4390 562 TIGRFAM PPR: pentatricopeptide repeat domain 293 325 IPR002885 -
Lja1g4390 562 TIGRFAM PPR: pentatricopeptide repeat domain 122 150 IPR002885 -
Lja1g4390 562 TIGRFAM PPR: pentatricopeptide repeat domain 257 290 IPR002885 -
Lja1g4390 562 TIGRFAM PPR: pentatricopeptide repeat domain 153 178 IPR002885 -
Lja1g4390 562 Pfam PPR repeat family 254 301 IPR002885 -
Lja1g4390 562 Gene3D Tetratricopeptide repeat domain 44 185 IPR011990 GO:0005515
Lja1g4390 562 Gene3D Tetratricopeptide repeat domain 309 422 IPR011990 GO:0005515
Lja1g4390 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Lja1g4390 562 Pfam E motif 372 433 IPR046848 -
Lja1g4390 562 Pfam PPR repeat 329 353 IPR002885 -
Lja1g4390 562 Pfam PPR repeat 124 150 IPR002885 -
Lja1g4390 562 Pfam PPR repeat 153 178 IPR002885 -
Lja1g4390 562 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 526 - -
Lja1g4390 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Lja1g4390 562 Pfam DYW family of nucleic acid deaminases 470 562 IPR032867 GO:0008270
Lja1g4390 562 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 7 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4390 Lja-Chr1 56879138 56880826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4390 70 562 Glycoside Hydrolase AT3G49170 39.442 4.57e-119 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4390 - - gmx:100783911 872.848