Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01925 ATGACCGGAGACGGTGTCGTTTCCATGGATCACCTCCTCGCGGCGTTGGGGGAGACGAAGGAGGAGAGGGAGGTTCGTATTCGGAGTCTGTTCAATTTCTTCGACGCTGCCAACAACGGTTACTTGGACGTCGCTCAGATAGAGGTCGGTTTGTCGGCGCTGCAGATTCCGCCTGAGTACAAGTACGCCAGGGAGCTCTGCGAGGTTTGCGACGCCAACAGCGATGGCAGAGTGGAGTACCACGAGTTCCGCCGCTACATGGACGACAAGGAGTTGGAGCTTTACCGCATCTTCCAAGCCATTGATGTTGAACACGACGGCAACATTATCCCTGAAGAGCTCTACGAAGCCCTTCTTAAAGCTGGGATTGAAATGGATGACGAGGAGCTTGCTCGCTTTGTGGACCATGTTGATAAGGATAACAATGGAATTATCACTTTCGAAGAATGGAGAGATTTTCTTCTACTTTACCCTCATGAAGCAACTATTGAAAATATATATCATCATTGGGAGAGGGTGTGCCTTGTGGACATTGGAGAGCAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGCGAACCGGACCAAATACTTTCTTGCTGGTGGAGTAGCAGGAGGTATTTCTCGTACAGTAACTGCTCCTCTTGATCGTCTGAAGGTGGTTTTACAAGTTCAAACTGCACATGCTTCTATCATGCCAGCAGTAACGAAGATATTGAAGCAAGATGGTCTGTTAGGATTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGTATCACCAGAAAGTGCCATCAAATTTTATGCTTTTGAAATGCTGAAAAAGGTAATTGGAGAGTCTCAAGGCAGCAAGTCGGATATTGGTACTGCTGGGAGGCTTTTTGCTGGTGGTATGGCTGGTGCAGTTGCACAGGCTGCTATCTATCCAATGGATCTCATTAAAACAAGGTTACAGACTTGTCCCTCTGTAGGTGGAAAGGTTCCTAAGCTTGGAACACTTACAATGAATATATGGGTTCAAGAGGGACCTCGGGCTTTCTACAGAGGGCTTGTTCCGTCTCTGCTTGGCATGATTCCCTACGCCGCCATTGATCTCACTGCTTATGATACCTTGAAAGATATGTCCAAGAGACATATTCTTCAGGATAAGGAACCTGGTCCTCTAGTACAACTAGGATGTGGGACAATTTCTGGGGCTGTTGGAGCTACTTGTGTCTATCCACTGCAGGTTATTCGGACAAGACTGCAGGCACAACCTTCCAACACTTCCGATGCGTACAAGGGGATGTTTGATGCCTTTCGGAGAACTTTTCAGCTTGAAGGCTTTATAGGTTTCTACAAGGGACTCTTTCCGAATCTCCTCAAAGTTGTGCCGGCTGCAAGCATTACTTATGTGGTCTATGAAAGTATGAAGAAGAATCTAGATCTGGATTAG 1431 0.4689 MTGDGVVSMDHLLAALGETKEEREVRIRSLFNFFDAANNGYLDVAQIEVGLSALQIPPEYKYARELCEVCDANSDGRVEYHEFRRYMDDKELELYRIFQAIDVEHDGNIIPEELYEALLKAGIEMDDEELARFVDHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHANRTKYFLAGGVAGGISRTVTAPLDRLKVVLQVQTAHASIMPAVTKILKQDGLLGFFRGNGLNVVKVSPESAIKFYAFEMLKKVIGESQGSKSDIGTAGRLFAGGMAGAVAQAAIYPMDLIKTRLQTCPSVGGKVPKLGTLTMNIWVQEGPRAFYRGLVPSLLGMIPYAAIDLTAYDTLKDMSKRHILQDKEPGPLVQLGCGTISGAVGATCVYPLQVIRTRLQAQPSNTSDAYKGMFDAFRRTFQLEGFIGFYKGLFPNLLKVVPAASITYVVYESMKKNLDLD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01925 476 SMART efh_1 26 54 IPR002048 GO:0005509
Phco7g01925 476 SMART efh_1 129 157 IPR002048 GO:0005509
Phco7g01925 476 SMART efh_1 93 121 IPR002048 GO:0005509
Phco7g01925 476 SMART efh_1 62 90 IPR002048 GO:0005509
Phco7g01925 476 ProSiteProfiles Solute carrier (Solcar) repeat profile. 384 472 IPR018108 -
Phco7g01925 476 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Phco7g01925 476 SUPERFAMILY EF-hand 13 190 IPR011992 -
Phco7g01925 476 ProSiteProfiles Solute carrier (Solcar) repeat profile. 286 373 IPR018108 -
Phco7g01925 476 PRINTS Mitochondrial carrier protein signature 197 210 IPR002067 GO:0055085
Phco7g01925 476 PRINTS Mitochondrial carrier protein signature 346 364 IPR002067 GO:0055085
Phco7g01925 476 PRINTS Mitochondrial carrier protein signature 250 270 IPR002067 GO:0055085
Phco7g01925 476 PRINTS Mitochondrial carrier protein signature 301 319 IPR002067 GO:0055085
Phco7g01925 476 PRINTS Mitochondrial carrier protein signature 210 224 IPR002067 GO:0055085
Phco7g01925 476 PRINTS Mitochondrial carrier protein signature 393 415 IPR002067 GO:0055085
Phco7g01925 476 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Phco7g01925 476 Gene3D Mitochondrial carrier domain 188 474 IPR023395 -
Phco7g01925 476 ProSiteProfiles EF-hand calcium-binding domain profile. 22 57 IPR002048 GO:0005509
Phco7g01925 476 CDD EFh 93 154 IPR002048 GO:0005509
Phco7g01925 476 PANTHER SOLUTE CARRIER FAMILY 25 150 473 - -
Phco7g01925 476 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 105 180 - -
Phco7g01925 476 SUPERFAMILY Mitochondrial carrier 191 467 IPR023395 -
Phco7g01925 476 Gene3D - 25 102 - -
Phco7g01925 476 FunFam Mitochondrial substrate carrier family protein 1 92 - -
Phco7g01925 476 Pfam EF-hand domain pair 93 152 IPR002048 GO:0005509
Phco7g01925 476 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 275 IPR018108 -
Phco7g01925 476 Gene3D - 105 180 - -
Phco7g01925 476 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Phco7g01925 476 Pfam Mitochondrial carrier protein 285 374 IPR018108 -
Phco7g01925 476 Pfam Mitochondrial carrier protein 385 473 IPR018108 -
Phco7g01925 476 Pfam Mitochondrial carrier protein 195 278 IPR018108 -
Phco7g01925 476 FunFam Mitochondrial substrate carrier family protein 188 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01925 Phco-Chr7 23721715 23724109 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01925 7 23721715 23724109 Phco7g01925 7 23721715 23724109 ECH
Phco4g03190 4 52611632 52614359 Phco7g01925 7 23721715 23724109 PCT