Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00257 ATGGCTCGATATTACACCAACATGAAGAGAGTGTACAAGCTCCACGCCACGCTCATCACAAGCGGGCAACACAACAACCCTCTCTCCCTCCGCACCTTCATTCTCCGCTGCGTCGACTCATCATCACCATCACCCTCCGACGCCGCACGGTACGCCGCCGCCGTGCTCCTCCGCTTCCCCATCCCCGGGGACCCTTTCCCCTACAACGCCGTCATCCGCCACGTGGCACTCCACGCCCCCTCCCTCGCCCTCGTTCTCTTCTCCCACATGCACCGCACCGGCGTCCCCTTCGACCACTTCACCTTCCCTCTCATCCTCAAAACCCAAACCCTAAACCCCCATCAAATCCACTCCCTCATTCTCAAACTCGGTTTCCACTCCAACATTTACGTCCAAAACGCCCTCATCAACTCCTACGGCTCTTCCAGGTCCCTCCGCGTGTCCCTCCAACTGTTCGACGAAATGCCCCACCGAGACTTAGTCTCATGGTCCTCTCTCATTTCATCTTTCGCCAAAAACGGCTTCCCCACTGAGGCCCTTACCCTTTTCCAACAAATGCAGCTCCGCGAGAGTGCAATCCTCCCCGATGGGGTCATCATGTTGAGTGTCATTTCAGCTGTTTCATGCTTAGGTTCTTTAGAATTAGCCATTTGGGTTCACGCTTTTATTACCAAGATTAATCTTAACCTTACTGTTCCATTAGGTTCAGCGCTCATTGACATGTACTCCAGATGCGGTGACATTGATCGTTCTGTTAAGGTGTTCCACGAAATGCCTCACCGGAACGTTGTCACGTGGACCGCCCTTATCAATGGGCTCGCTGTCCATGGACGTGGTGAGGAGGCTTTGGAGGCTTTCTATAAGATGATGGAGTCTGGTTTGAAGCCTGATCGCGTCGCCTTTAAGGGCGCGTTGGTGGCTTGTAGCCATGGCGGGCTCGTGGAGGAGGGGCGGCAGGTTTTCGATAGCATGTCGAGTGTGTACCGTGTTGAGCCGGAGCTTGAGCATTATGGTTGTGTGGTTGATCTTCTTGGCCGCGCTGGCATGGTGCTTGAGGCTTTCGAGTTTGTGGAGGGGATGCGTGTTAGGCCGAATTCGGTTATTTGGAGGACCTTGCTTGGGGCCTGTGTGAATCACAATCATCTTGAGTTGGCTGAGAGGGCCAAGGAGATGATCAACGAGTTGGATCCTCGTCATGATGGTGATTATGTGCTTTTGTCGAACGCTTATGGTGGAGTTGGTAAATGGGTTGAGAAGGAGGGTGTGAGGAATTCAATGAGGGAGAATAGAATTGTCAAGGAGCCTGGAATTAGTTTGGTGCATGTTGATCAAGTGGTTCATGAGTTTGTGTCGGGAGATAATTCTCATCCTCAGTGGGAGGAGATTACAAGGTTTTTAGGCTCGGTTATTGACACTGTAAAACTTGGAGGTTACACCCCTAATACGTCCAATGTGCTGCATGACATTCAGGAGGAGGAGAAACAGCATTGTCTGGGCTATCACAGTGAGAAATTGGCAGTAGCTTTTATACTTCTTTATCATAGGAATAGAAAGACCATTAGGGTAATTAAGAATCTTAGGATTTGTTATGACTGTCATAGTTTCATGAAGCACGTTTCTGGTTTCTTTAACAGAGACATAGTTATTAGGGATAGAAGTCGGTTCCATCATTTTAGCAAGGGATCGTGTTCTTGCCGAGATTTTTGGTAA 1710 0.5018 MARYYTNMKRVYKLHATLITSGQHNNPLSLRTFILRCVDSSSPSPSDAARYAAAVLLRFPIPGDPFPYNAVIRHVALHAPSLALVLFSHMHRTGVPFDHFTFPLILKTQTLNPHQIHSLILKLGFHSNIYVQNALINSYGSSRSLRVSLQLFDEMPHRDLVSWSSLISSFAKNGFPTEALTLFQQMQLRESAILPDGVIMLSVISAVSCLGSLELAIWVHAFITKINLNLTVPLGSALIDMYSRCGDIDRSVKVFHEMPHRNVVTWTALINGLAVHGRGEEALEAFYKMMESGLKPDRVAFKGALVACSHGGLVEEGRQVFDSMSSVYRVEPELEHYGCVVDLLGRAGMVLEAFEFVEGMRVRPNSVIWRTLLGACVNHNHLELAERAKEMINELDPRHDGDYVLLSNAYGGVGKWVEKEGVRNSMRENRIVKEPGISLVHVDQVVHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPNTSNVLHDIQEEEKQHCLGYHSEKLAVAFILLYHRNRKTIRVIKNLRICYDCHSFMKHVSGFFNRDIVIRDRSRFHHFSKGSCSCRDFW 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00257 569 Pfam E motif 379 440 IPR046848 -
Cca03g00257 569 Pfam PPR repeat family 261 302 IPR002885 -
Cca03g00257 569 Gene3D Tetratricopeptide repeat domain 80 188 IPR011990 GO:0005515
Cca03g00257 569 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 49 528 - -
Cca03g00257 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Cca03g00257 569 Gene3D Tetratricopeptide repeat domain 189 444 IPR011990 GO:0005515
Cca03g00257 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Cca03g00257 569 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 49 528 - -
Cca03g00257 569 Pfam DYW family of nucleic acid deaminases 477 569 IPR032867 GO:0008270
Cca03g00257 569 TIGRFAM PPR: pentatricopeptide repeat domain 264 297 IPR002885 -
Cca03g00257 569 TIGRFAM PPR: pentatricopeptide repeat domain 237 263 IPR002885 -
Cca03g00257 569 TIGRFAM PPR: pentatricopeptide repeat domain 131 160 IPR002885 -
Cca03g00257 569 TIGRFAM PPR: pentatricopeptide repeat domain 161 188 IPR002885 -
Cca03g00257 569 Pfam PPR repeat 161 187 IPR002885 -
Cca03g00257 569 Pfam PPR repeat 336 362 IPR002885 -
Cca03g00257 569 Pfam PPR repeat 133 158 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00257 Cca-Chr3 3793808 3795545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00257 83 569 Glycoside Hydrolase AT3G49170 39.235 2.37e-116 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00257 - - gmx:100783911 989.178