Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01442 ATGGAAACCCCCGAAAACGCCGCATACTGTTCGTCGTGGCTGCCGCCGGAAGACGAAAACGACAGCGGCGCCAAATTGGCAAAATCGGTGAACAAACTCAACGACCTCGCCGTTGCGATACAAGCCTTCAATAACAGGTACGAAGAATTGCAGAAACACCTCGAATTCATCGAACAAGCCATTGACACGAGGACCAAGGAGCTCCGAGCACTAGGCTACAATTCTACTCAAGGAACCGCCGAAAACGGCGTCGTTCAATCAGATTCAAATCCGAAGCCAGAAGAAGCCAAGGCGGTAGAGAAAGAGAaagaaaaggtaaaagaagaagaaaaagaaaaagaagaCGAGCTTATTACGCTTTGCAAAACGATGAATAGCCGAGGCCTGCGTAAATACGTGTTAACGCGTCTATCCGAAACGGCGTCGCTTCGGGAACAGGTACCCGTTGCGCTGAGGAGCGCGGCGAAGCCCTCAAGGCTGGTGTTTGAATGCATTGGGAGGTTTTTCCTTCAGGGGAGCAAAGCTTACACGAAGAACTCGCCGATGGTTCCCGCAAGGCAGGTTTCGGTGCTGGTTTTGGAGCACTACTTGCTCTCTGGCTGCGTTGGGAATGAGAAGGACGTGGAGGCTTCGTTGAAGAGGGAGGCGGATTCCGCCGCGGTTGCGTGGAGGAAGAGGATGTTTGTTGAAGGGGGTTTGCTGAAGGCAGCTGAGGTTGATGCCAGGGGTTTGATTCTCTTCGTCGCCGGCTTCGGGATTCCCAGTGTTTTCAAGGATGAGGATATATACAACTTGGTTTGTGTCAGCAATGGCAGAGAATTCTCCGATGCCCTGCTCCAGTCTCAGCCCCTGCTTAAGAGGGTTTCAGATGTTGCAGATGGGATGATGAAAAAGGGCATGGCCGTTAAAGCTGTTGATTTGGCTTATACCTTTGGGTTTGAAGAGAAATATTCTCCTCAGACAGCTCTGACTTCATTTCTGCAGAAGTCTGAAGAAACTTGGAAGAAAGCCAAACAAGACGCACGTGATTTTCCTAGTGCACTGAAGGTAGCACATGAAAAATATTTGGCTGCTTTGCAATCTGTAGTTAAATGTTTGGAAGGTCACAAGATTGACCCTGTAAAATTTCTGCCTGGGTGGCAACTTAAGAATAAGATTACCAACTTGGAGAAAGATATTAGTGATACCAATAAAAAAATTGATGAGAAGTCAATGCTCAAGAGAAAAGTGGATAAAAACAATTCATCTAACAAGATGAAGATTCCAGAGGCTAAACGAGCAAGGTTCACCGGGAAAGATGCATCTGTGCTATCACCTTCACTTGCTACCTTGCAAGAGCAAAGGATTTTTAGTCGCATGGATGGCAATAGCTCATATGATGGTTCATTGTCGGCACATTTGCTGGATGGTAGATCCTATGGCAATTACCCGAATAATTATCTCACTGCAGCATCTGCTTCGGATTCTTTGGCTGAAAAATATCTTGGAAGTGCAGTGGCAAGTGGGGCTAATATGCTTGGAGGAGCTATGGGTGGTTCATTTTCTGGGTATCAGGGGGATATGTATAGATATCATGGAATTGGGGAAGGGGCATTGTCTCATGATAGGTCAGTTGGACAGAGTTTTGTGGGACAATCTGCATCAACATTGAATAATTTGTATGGGAAAACATCCACAGAAGGTTTTGCAGGTGTGCCAGAGCACCTCTCTGTTGGTGCTTCTAGTCGCAGTGGAGCATGTGTTTTGATCATCCTCAACAATTTTTTACCTGCCCATGGGAATGCAGAATTGGTGAAAAAAACTAGATTCAGGCACAGGCCGCGTGTGCCTTGCGTTTGGGACAAAGGGTTTTCTTCACTTCTTTTCCTAGCACTAGCAGTGAGCGTTACTCTGCCACCGTCGCCACCTGGGATTGCCGCCGGCGCTGCCACTCTTCAAGGCTTCATTGAAGACACGTCGCACCGCCAGTCTTCGTTGCCACTTGCTCACTCCTCCTTCTTCGCCGTCGCACCACCCAAGTCTCCAACTCAGCCTCGCCATTCGCATTCGTGGGAAGCATTTGGGAAAGAGAATCATCAACTTCCTCTCGGATCATGCACGTTCAATGGGATGCTACAAGAGATGGCGAGATACTACCACTCCAACATGAAGAGCGTGTACAACCTCCACGCCACGCTGATAAAAAACGCCCAACACGACAACCCTCTCTCCCTCCGAACCTTCATTCTCCGCTGCGCCAACTCATCGTCACCACCCGACACCGCCCGTTACGCCGCTGCCGTGCTCCTCCGCTTCCCCATCCCCGGCGACCCCTTCCCCTACAACGCCGTCATTCGCCACGTGGCACTCCACGCTCCCTCCCTCGCCCTCGCCCTCTTCTCTCACATGCACCGCACCAACGTCCCCTTCGACCATTTCACCTTCCCCCTCATCCTTAAATCCTCAAAACTAAACCCTCATTGCATTCACACTCTCGTTCTCAAACTCGGATTTCACTCCAATATCTATGTCCAAAACGCGCTTATTAATTCCTACGGCACCTTTGGGTCCCTCCACGCGTCCCTCAAACTGTTCGACGAAATGCCCCACCGAGACTTGATCTCTTGGTCCTCTTTAATCTCTTGTTTCGCTAAACGCGGGCTCCCCGATGAAGCCCTAACACTTTTCCAACAAATGCAGCTTAAAGAGAGTGATATCTTACCCGATGGGGTTGTCATGCTGAGTGTGATATCCGCGGTTTCGAGCTTGGGTGCCTTGGAATTGGGTATCTGGGTTCACGCTTTTATTTCCAGGATCGGGGTTAACCTTACTGTTTCATTGGGTTCTGCACTTATTGACATGTATTCGAGATGCGGGGACATTGATCGTTCGGTTAAGGTGTTCGATGAAATGCCTCACAGGAATGTTGTCACGTGGACCGCGCTGATTAACGGGCTTGCCGTGCATGGACGTGGTAGGGAGGCTCTGGAGGCGTTTTATGACATGGTGGAGTCCGGTTTGAAGCCTGATCGCATCGCATTTATGGGTGTGTTGGTGGCTTGTAGTCATGGAGGGCTTGTAGAGGAGGGGAGACGGGTTTTTAGTAGCATGTGGAGTGAGTATGGCATTGAACCGGCACTTGAGCATTATGGTTGTATGGTTGATCTTCTTGGCCGTGCTGGCATGGTGCTTGAAGCTTTCGATTTCGTGGAGGGTATGCGTGTTAGGCCAAATTCGGTTATTTGGAGGACCTTGCTTGGAGCATGTGTCAATCACAATCTCCTTGTGCTGGCTGAGAAGGCCAAGGAGAGGATCAAGGAGTTGGACCCTCATCATGATGGTGATTATGTACTTTTGTCGAATGCTTATGGTGGAGTTGGTAACTGGGTTAAGAAGGAGGGTGTGAGGAATTCAATGAGGGAGAGTAAAATTGTCAAAGAGCCTGGCCTTAGTTTGGTTCACATTGATCAAGTGGCTCATGAGTTTGTATCGGGAGATAATTCTCATCCGCAGTGGGAGGAGATTACAAGATTTTTAGGTTCAGTTATTGACACTGTGAAACTTGGAGGCTACACCCCTAagggtccaactgggaggttttctaacggcaaaacagtcacagacatcctcgTTTTTACAGGGGAAATTATAGGTCTTCCTTTACTGCCAGCTTTTGCAGATACCCTGATAAAAAGCAGAAACATTTCCTGGGGAGTGAACTATGCTTCAGCTGCTGCTGGGATCCTTGATGAGACAGGGCAAAATTTGGGAGAACGCATTAGCTTTCGGCAGCAGGTGCAAGATTTTAATACAACCGTAAGGCAGATGAAGATCCAAATGGAGCACAACCAATTGAGTCAGCACTTAGCAAATTCATTGACAGTAGTGATCCATGGCAGTAATGATTACATAAACAACTATTTCTTGCCTGAACAATATACTTCAAGCTTCAACTATGACCCAAAAAACTATGCAGATCTTCTCATTGAGGTTTACAAAAGGCACATTTTGAGTCTTCATGATTTGGGACTCAGAAGATTCTTACTGGCAGGACTTGGGCCACTTGGTTGCATACCTAGACAATTAGCCTTAGGCTCTGTCCCTCGAGGAGAGTGTAGACCTCACATCAATGACATTGTCGACATGTTCAATGTTTTGTTGAAATCTTTGGTGGATCAACTGAATGCGGAGCACCATGGTTCAGTTTTTGCGTATGGCAACACTTACGGAGTTTTCAATGATCTGATTAACAACGCAAAAACCTACGGTTTCACAGTAACTGATAGTGGGTGCTGTGGTATTGGAAGAAATCAAGCACAGATAACATGCTTATTTGCGTTGTTTCCTTGCCTGGATAGAGACAAATATGTGTTCTGGGATGCCTTCCATACCACTCAAGCAGTGAACAATATTGTTGCTCATAAGGCTTTTGCTGGACCTCCTTCTGATTGCTACCCAATTAACGTCAAACAGATGGCACAAATGTGGGTGTTACCATCCGGTCAAAACAAAACTTCAGTGCCGTCCATTGTATCAAAAAATTAG 4524 0.4671 METPENAAYCSSWLPPEDENDSGAKLAKSVNKLNDLAVAIQAFNNRYEELQKHLEFIEQAIDTRTKELRALGYNSTQGTAENGVVQSDSNPKPEEAKAVEKEKEKVKEEEKEKEDELITLCKTMNSRGLRKYVLTRLSETASLREQVPVALRSAAKPSRLVFECIGRFFLQGSKAYTKNSPMVPARQVSVLVLEHYLLSGCVGNEKDVEASLKREADSAAVAWRKRMFVEGGLLKAAEVDARGLILFVAGFGIPSVFKDEDIYNLVCVSNGREFSDALLQSQPLLKRVSDVADGMMKKGMAVKAVDLAYTFGFEEKYSPQTALTSFLQKSEETWKKAKQDARDFPSALKVAHEKYLAALQSVVKCLEGHKIDPVKFLPGWQLKNKITNLEKDISDTNKKIDEKSMLKRKVDKNNSSNKMKIPEAKRARFTGKDASVLSPSLATLQEQRIFSRMDGNSSYDGSLSAHLLDGRSYGNYPNNYLTAASASDSLAEKYLGSAVASGANMLGGAMGGSFSGYQGDMYRYHGIGEGALSHDRSVGQSFVGQSASTLNNLYGKTSTEGFAGVPEHLSVGASSRSGACVLIILNNFLPAHGNAELVKKTRFRHRPRVPCVWDKGFSSLLFLALAVSVTLPPSPPGIAAGAATLQGFIEDTSHRQSSLPLAHSSFFAVAPPKSPTQPRHSHSWEAFGKENHQLPLGSCTFNGMLQEMARYYHSNMKSVYNLHATLIKNAQHDNPLSLRTFILRCANSSSPPDTARYAAAVLLRFPIPGDPFPYNAVIRHVALHAPSLALALFSHMHRTNVPFDHFTFPLILKSSKLNPHCIHTLVLKLGFHSNIYVQNALINSYGTFGSLHASLKLFDEMPHRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPKGPTGRFSNGKTVTDILVFTGEIIGLPLLPAFADTLIKSRNISWGVNYASAAAGILDETGQNLGERISFRQQVQDFNTTVRQMKIQMEHNQLSQHLANSLTVVIHGSNDYINNYFLPEQYTSSFNYDPKNYADLLIEVYKRHILSLHDLGLRRFLLAGLGPLGCIPRQLALGSVPRGECRPHINDIVDMFNVLLKSLVDQLNAEHHGSVFAYGNTYGVFNDLINNAKTYGFTVTDSGCCGIGRNQAQITCLFALFPCLDRDKYVFWDAFHTTQAVNNIVAHKAFAGPPSDCYPINVKQMAQMWVLPSGQNKTSVPSIVSKN 1507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01442 1507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 865 901 IPR002885 -
Gma06g01442 1507 MobiDBLite consensus disorder prediction 74 89 - -
Gma06g01442 1507 Pfam E motif 1086 1146 IPR046848 -
Gma06g01442 1507 Pfam Frigida-like protein 110 400 IPR012474 -
Gma06g01442 1507 Coils Coil 92 119 - -
Gma06g01442 1507 Pfam PPR repeat 839 864 IPR002885 -
Gma06g01442 1507 Pfam PPR repeat 1042 1068 IPR002885 -
Gma06g01442 1507 Pfam PPR repeat 867 893 IPR002885 -
Gma06g01442 1507 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 753 1187 - -
Gma06g01442 1507 Pfam PPR repeat family 967 1013 IPR002885 -
Gma06g01442 1507 MobiDBLite consensus disorder prediction 1 23 - -
Gma06g01442 1507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 968 1002 IPR002885 -
Gma06g01442 1507 MobiDBLite consensus disorder prediction 74 109 - -
Gma06g01442 1507 Pfam GDSL-like Lipase/Acylhydrolase 1181 1468 IPR001087 GO:0016788
Gma06g01442 1507 Gene3D SGNH hydrolase 1170 1472 IPR036514 -
Gma06g01442 1507 Coils Coil 33 67 - -
Gma06g01442 1507 CDD SGNH_plant_lipase_like 1186 1473 IPR035669 -
Gma06g01442 1507 Gene3D Tetratricopeptide repeat domain 942 1161 IPR011990 GO:0005515
Gma06g01442 1507 Gene3D Tetratricopeptide repeat domain 782 927 IPR011990 GO:0005515
Gma06g01442 1507 TIGRFAM PPR: pentatricopeptide repeat domain 970 1003 IPR002885 -
Gma06g01442 1507 TIGRFAM PPR: pentatricopeptide repeat domain 867 894 IPR002885 -
Gma06g01442 1507 TIGRFAM PPR: pentatricopeptide repeat domain 943 969 IPR002885 -
Gma06g01442 1507 MobiDBLite consensus disorder prediction 93 109 - -
Gma06g01442 1507 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 753 1187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01442 Gma-Chr6 13714953 13729735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01442 789 1186 Glycoside Hydrolase AT3G49170 34.653 1.27e-74 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01442 - - gmx:100784969 1090.87