Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3252 ATGATAAGAGTGTACAAGTTACACGCTACACTAATAAAAACCGGAAAACACCAGAACCCACTCTCCCTCCGCCCCTTCTTCCTTAGCTGCTCCGAATCCCCCGCCACCGCACTCTATGCTGCCTCCGTCTTACTCCGCTTTCCCATTCCACCGGACCCATTCTCCTACAACACCGTCATCAAACATGTCTCACCTCATTCTCCCACCCTCGCCCTTTCCCTATTTTCCCATATGCGCCATAACTCCGTCCCCTTCGACCACTTCACTTTCCCACTCTTCCTCAAATACCACCACAACCATCACCACCGTCTTCATTCCCTCATTCTCAAGCTCGGTTTTGACTCTAATATCTTCGTTCAGAATGCGCTTATCAATGCTTATGGTTGTCATGGCTCACTCTATGTTGCAGTTAAACTGTTCGATGAAATGCTTCACAGAGATATAGTTTCTTGGTCTACTTTAATATCTTGTTTGGTCAATAACAATCTTCCAGCTCACGCCGTTTCTGTTTTCCAACAAATGCAGCTGGATCAACCCGACATTGTAAATTCGCTTGATGGGGTTATCATGTTGAGTGTGATATCTGCGGTTTCGAGCTTAGGTCTGCTTGAATTAGGTATCTGGGTTCATTGTTTTATTTCCAGGATAGGGCTTTCGGTTACTGTTCCACTGGGCAATGCTCTTATTAATATGTATTCGAGATGTGGGTGTATTGATCGTTCTGTCAAGGTGTTTGATGAAATGCCGAATAGAAATGTAGTTACTTGGACTGCTTTGGCTAATGGGCTTGCTGTTCATGGACGTAGTAGGGAGGCTTTGAAAGCGTTTTATGACATGAAGGAGTCTGGTTTGAAGCCTGACAGGGGGGCGTTTATAGGTGTTTTGGTGGCTTGTAGTCATGGTGGTCTTGTGGAGGATGGTTGGAGGGTTTTCGAAAGCATGAAGAATGAGTTTGGAATTGAACCTATGATTGAGCATTATGGTTGCATGGTTGACGTTCTTGGTCGTGCAGGGCTGCTTCTTGAAGCTTTTGAGTTTGTGGAGAAAATGCCTTTGAAACCAAACTCTGTTATTTGGAGGACTTTGCTTGGGGCGTGTGTAAATCACAATAATCTTTTGTTGGCTGAAAAGGCTAGGGAAAGGGTCAATGAGCTTGACCCACATCATGATGGTGATTATGTGCTTTTATCAAATGCATATGGTGGAGTTGGTAACTGGGGTGGTAAGGCTGGCTTGAGAAATTCTATGAGGCAGAATAGAATTGTCAAGGAGCCTGGCCTTAGTTTTCTCCATATTGATCAAGTGGTTCATGAGTTTGTCTCTGGCGATCGTGCTCATCCACAATGGGAGGAGATTACAAATTTTTTAGTTTCAGTTATGGATACTGTAAAATTTGGAGGTTACACCCCTAATACTTCCTCTGTGTTACATGATATTCAAGAGGAAGAGAAAGAGCATTGTGTGGGTTATCATAGTGAGAAATTGGCAGTGGCTTTTGTGCTTCTTTATCATAGGGATAGTAAGACCATTAGGGTCATTAAGAATCTTAGGATTTGTTTTGACTGTCATGATTTCATGAAGCATGTTTCAGGCATCTTTGACAGAGATATTATTATTAGAGATCGAAATCGATTCCATCACTTTAGCAAGGGATCATGTTCTTGTCGAGATTTTTGGTAA 1680 0.4298 MIRVYKLHATLIKTGKHQNPLSLRPFFLSCSESPATALYAASVLLRFPIPPDPFSYNTVIKHVSPHSPTLALSLFSHMRHNSVPFDHFTFPLFLKYHHNHHHRLHSLILKLGFDSNIFVQNALINAYGCHGSLYVAVKLFDEMLHRDIVSWSTLISCLVNNNLPAHAVSVFQQMQLDQPDIVNSLDGVIMLSVISAVSSLGLLELGIWVHCFISRIGLSVTVPLGNALINMYSRCGCIDRSVKVFDEMPNRNVVTWTALANGLAVHGRSREALKAFYDMKESGLKPDRGAFIGVLVACSHGGLVEDGWRVFESMKNEFGIEPMIEHYGCMVDVLGRAGLLLEAFEFVEKMPLKPNSVIWRTLLGACVNHNNLLLAEKARERVNELDPHHDGDYVLLSNAYGGVGNWGGKAGLRNSMRQNRIVKEPGLSFLHIDQVVHEFVSGDRAHPQWEEITNFLVSVMDTVKFGGYTPNTSSVLHDIQEEEKEHCVGYHSEKLAVAFVLLYHRDSKTIRVIKNLRICFDCHDFMKHVSGIFDRDIIIRDRNRFHHFSKGSCSCRDFW* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3252 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Tpr3g3252 559 Pfam PPR repeat family 251 289 IPR002885 -
Tpr3g3252 559 TIGRFAM PPR: pentatricopeptide repeat domain 149 175 IPR002885 -
Tpr3g3252 559 TIGRFAM PPR: pentatricopeptide repeat domain 226 253 IPR002885 -
Tpr3g3252 559 TIGRFAM PPR: pentatricopeptide repeat domain 254 287 IPR002885 -
Tpr3g3252 559 TIGRFAM PPR: pentatricopeptide repeat domain 119 149 IPR002885 -
Tpr3g3252 559 Pfam DYW family of nucleic acid deaminases 467 559 IPR032867 GO:0008270
Tpr3g3252 559 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 523 - -
Tpr3g3252 559 Gene3D Tetratricopeptide repeat domain 65 182 IPR011990 GO:0005515
Tpr3g3252 559 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 6 523 - -
Tpr3g3252 559 Gene3D Tetratricopeptide repeat domain 183 298 IPR011990 GO:0005515
Tpr3g3252 559 Gene3D Tetratricopeptide repeat domain 299 390 IPR011990 GO:0005515
Tpr3g3252 559 Pfam PPR repeat 121 147 IPR002885 -
Tpr3g3252 559 Pfam PPR repeat 326 351 IPR002885 -
Tpr3g3252 559 Pfam PPR repeat 149 175 IPR002885 -
Tpr3g3252 559 Pfam E motif 369 429 IPR046848 -
Tpr3g3252 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3252 Tpr-Chr3 35805767 35807575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3252 68 559 Glycoside Hydrolase AT3G49170 38.645 7.87e-116 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3252 - - gmx:100783911 860.522