Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1641 ATGACCGGAAACGGCGTCGTTTCCATGGATCACCTCCTCGCGGCGTTGGGGGAGACGAAGGAGGAGAGGGAGGTTCGTATTCGGAGCCTGTTCAATTTCTTCGACGCTGCCAACAACGGTTACTTGGACGTCGCTCAGATAGAGGTTGGTTTGTCGGCGCTGCAGATTCCGCCGGAGTACAAGTACGCCAGGGAGCTCTGCGAGGTTTGCGACGCCAACAGCGATGGCAGAGTGGAGTACCACGAGTTCCGCCGCTACATGGACGACAAGGAGTTGGAGCTTTACCGCATCTTCCAAGCCATTGATGTTGAACACGACGGCAACATTATCCCTGAAGAGCTCTATGAAGCCCTTCTTAAAGCTGGGATTGAAATGGATGACGAGGAGCTTGCTCGCTTTGTGGACCATGTTGATAAGGATAACAATGGAATTATCACTTTCGAGGAATGGAGAGATTTTCTTCTACTCTACCCTCATGAAGCAACTATTGAAAATATATATCATCATTGGGAGAGGGTGTGCCTTGTGGACATTGGAGAGCAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGCGAACCGGACCAAATACTTTCTTGCTGGTGGAGTAGCAGGAAGTATTTCTCGTACAGTAACTGCACCTCTTGATCGTCTGAAGGTGGTTTTACAAGTTCAAACTGCACATGCTTCTATCATGCCAGCAGTAACGAAGATATTGAAGCAAGATGGTCTGTCAGGATTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGTAACACCAGAAAGTGCCATCAAATTTTATGCTTTTGAAATGCTGAAAAAGGTAGTTGGAGAGGCTCAAGGCAGCAAGTCGGATATTGGTACTGCTGGGAGGCTTTTTGCAGGAGGTATGGCTGGTGCAGTTGCACAGGCTGCTATCTATCCAATGGATCTCATTAAAACAAGGTTACAGACTTGTCCCTCTGAAGGTGGAAAGGTTCCTAAGCTGGGAACACTTACAATGAATATATGGGTTCAAGAGGGACCTCGAGCTTTCTACAGAGGGCTTGTTCCATCTTTGCTTGGCATGATTCCCTACGCAGCCATTGATCTCACTGCATATGATACCTTGAAAGATATGTCCAAGAGACATATTCTTCAGGATAGGGAACCTGGTCCTCTAGTACAACTAGGATGTGGGACAATTTCTGGGGCTGTTGGAGCTACTTGTGTCTATCCACTGCAGGTTATTCGGACAAGACTGCAGGCACAATCTTCCAACGCTTCCGATGCATACAAGGGGATGTTTGATGCCTTTCGGAGAACTTTTCAGCTTGAAGGATTTATAGGTTTCTACAAGGGACTGTTTCCAAATCTCCTCAAAGTTGTGCCGGCTGCAAGCATTACTTATGTGGTCTATGAAAGTATGAAGAAGAATCTAGATCTGGATTAG 1431 0.4682 MTGNGVVSMDHLLAALGETKEEREVRIRSLFNFFDAANNGYLDVAQIEVGLSALQIPPEYKYARELCEVCDANSDGRVEYHEFRRYMDDKELELYRIFQAIDVEHDGNIIPEELYEALLKAGIEMDDEELARFVDHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHANRTKYFLAGGVAGSISRTVTAPLDRLKVVLQVQTAHASIMPAVTKILKQDGLSGFFRGNGLNVVKVTPESAIKFYAFEMLKKVVGEAQGSKSDIGTAGRLFAGGMAGAVAQAAIYPMDLIKTRLQTCPSEGGKVPKLGTLTMNIWVQEGPRAFYRGLVPSLLGMIPYAAIDLTAYDTLKDMSKRHILQDREPGPLVQLGCGTISGAVGATCVYPLQVIRTRLQAQSSNASDAYKGMFDAFRRTFQLEGFIGFYKGLFPNLLKVVPAASITYVVYESMKKNLDLD* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1641 476 ProSiteProfiles EF-hand calcium-binding domain profile. 22 57 IPR002048 GO:0005509
Pvu9g1641 476 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Pvu9g1641 476 ProSiteProfiles Solute carrier (Solcar) repeat profile. 286 373 IPR018108 -
Pvu9g1641 476 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Pvu9g1641 476 Gene3D - 3 171 - -
Pvu9g1641 476 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Pvu9g1641 476 SUPERFAMILY Mitochondrial carrier 191 467 IPR023395 -
Pvu9g1641 476 SMART efh_1 93 121 IPR002048 GO:0005509
Pvu9g1641 476 SMART efh_1 62 90 IPR002048 GO:0005509
Pvu9g1641 476 SMART efh_1 26 54 IPR002048 GO:0005509
Pvu9g1641 476 SMART efh_1 129 157 IPR002048 GO:0005509
Pvu9g1641 476 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 275 IPR018108 -
Pvu9g1641 476 CDD EFh 93 154 IPR002048 GO:0005509
Pvu9g1641 476 PANTHER SOLUTE CARRIER FAMILY 25 41 474 - -
Pvu9g1641 476 Gene3D Mitochondrial carrier domain 188 474 IPR023395 -
Pvu9g1641 476 SUPERFAMILY EF-hand 13 190 IPR011992 -
Pvu9g1641 476 Pfam Mitochondrial carrier protein 385 473 IPR018108 -
Pvu9g1641 476 Pfam Mitochondrial carrier protein 195 277 IPR018108 -
Pvu9g1641 476 Pfam Mitochondrial carrier protein 285 374 IPR018108 -
Pvu9g1641 476 PRINTS Mitochondrial carrier protein signature 197 210 IPR002067 GO:0055085
Pvu9g1641 476 PRINTS Mitochondrial carrier protein signature 210 224 IPR002067 GO:0055085
Pvu9g1641 476 PRINTS Mitochondrial carrier protein signature 250 270 IPR002067 GO:0055085
Pvu9g1641 476 PRINTS Mitochondrial carrier protein signature 301 319 IPR002067 GO:0055085
Pvu9g1641 476 PRINTS Mitochondrial carrier protein signature 346 364 IPR002067 GO:0055085
Pvu9g1641 476 PRINTS Mitochondrial carrier protein signature 393 415 IPR002067 GO:0055085
Pvu9g1641 476 ProSiteProfiles Solute carrier (Solcar) repeat profile. 384 472 IPR018108 -
Pvu9g1641 476 Pfam EF-hand domain pair 93 152 IPR002048 GO:0005509
Pvu9g1641 476 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 41 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1641 Pvu-Chr9 23048771 23052165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1641 5 476 EF-hand Containing Proteins AT5G51050 73.207 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1641 K14684 - gmx:100795008 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1641 9 23048771 23052165 Pvu9g1641 9 23048771 23052165 ECH
Pvu2g2884 2 44438700 44442324 Pvu9g1641 9 23048771 23052165 PCT