Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2308 ATGGCGTCAGCAGCAGCTGGACCGGGTTGGTTCAGGGGAAGGGTGAAAGCAGTTCCTTCGGGGGACTGTTTGGTCATTGTGGCCTTGTCAAGCTCTAAGCCTGGTCGCCTTCCTGAGAAGACTCTCACTTTATCATCTCTCATTGCTCCTAGACTGGCACGTAGAGGTGGTGTGGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTTCTGAGGAAGCTCTGCATTGGGAAGGAGGTGATCTTCAAAGTTGATTACACTGTGCCTTCAATAGGTAGAGAGTTTGGGAGTGTTATGCTTGGTGACAAGAATGTTTCACTGCTGGTTGTTTCTCAAGGATGGGCAAAGGTCAGAGAGCAGGGGCAACAGAAAGGAGAGGCGAGTCCCTACCTCGCAGAGCTGTTACAGTTGGAAGAACAAGCTAAACAAGAAGGTCTTGGTCGTTGGAGCAAGGTTCCTGGCGCTGCTGAGGCATCCATCAGAAATCTTCCACCTTCCGCCCTTGGAGGGGATGATAGTAAGTTCAATGCTATGGCTTTGTTAGATGCTAAAAAGGGAGTACCTATGGAAGCAATTGTTGAGCAGGTTCGTGATGGGAGTACCCTCAGGATATATTTGCTCCCAGAATTTCAGTTTGTACAAGTTTTTGTTGCTGGAATTCAGGCCCCACAAATGGGAAGGAGAGCTCCATCTGAAAGTGTTGTTGAATCAGAGTTGACAACTGATGACACTAATGGTAATGGAGATGCTGCAGGGGAAACTCGAGCCCCACTTACCTCTGCCCAAAGGCTTGCAGCTTCTGCATCCATTGAAACTTCTGCTGATCCTTTTGCACATGAAGCTAAATTTTTTACTGAGATGCGGGTGTTGAATCGAGATGTTCGTATTGTCCTGGAAGGTGTCGATAAGTACAAAAATTTGATTGGGTCAGTGTATTATTCTGATGGTGATTCAGCAAAGGACCTGGCATTGGAGCTTGTGGAAAATGGTTATGCCAAATATGTTGAGTGGAGTGCTAATATGATGGAAGAGGAGGCAAAGCGAAAGTTGAAGAATGCAGAGCTCCAGGCAAAGAAGAGCAGGTTAAGGTGTTGGACTAACTACGTTCCTCCCGTTACAAATTCAAAGGCAATTCATGACCAGAACTTTACTGGAAAGGTGGTGGAGGTTGTGAGTGGGGACTGCATCATTGTTGCTGATGATTCCATTCCATATGGTAGTCCTCTAGCTGAAAGGAGAGTTAACCTTTCAAGTATTAGGTGTCCAAAAATGGGCAATCCTCGTCGGGATGAAAAGCCAGCTGCCTATGCCCGCGAAGCAAAGGAGTTCTTGAGAACACGTCTCATTGGAAAACAAGTGAATGTTCAAATGGAGTATTCTAGAAAGATTGCTCCCACAGATGGATCTGCACCATCTGGGGGTGCTGATAACAGGGTGATGGATTTCGGATCAGTCTTCCTGTTGTCCAATGCAAAGCCTGGTGGTGGTGATGATGCCCCTTCATCTGCTCCACCTACTGCAAGTCAACAAACGGGGGTGAATGTTGCTGAGTTGGTAGTTGCACGTGGCTTCGGAACTGTCATTAGACATCGCGATTTTGAAGAAAGATCAAATTACTATGATGTTCTTCTTGCTGCTGAAGCACGGGCCACTTCTTCAAAGAAAGGGATCCATTCTAACAAAGATTCTCCAGTGATGCATATAACTGATTTGACCACGTCGTCATCCAAGAAAGCCAGAGACTTCTTGCCTTTCCTACACAAAAGTAGAAAAATTCCTGCTGTTGTGGAATATGTACTCAGTGGACACCGATTCAAATTGTTGATTCCAAAAGAAACTTGTAGTATTGCGTTTTCATTCTCTGGTGTCAGATGTCCTGGACGTGGTGAGCCATATTCAGAAGAGGCAATTGCCTTGATGAGGCGGAAGATAATGCAGAGAGATGTTGAGATTGAGGTCGAAACTGTTGATAGAACTGGAACATTCTTGGGGTCTTTATGGGAGTCCAGGACCAATGTGGCTTTGACGCTACTTGAAGCTGGACTAGCAAAACTTCAAACTTCATTTGGAGGTGACAGAATTCCTGATTTTCACCTTCTGGAGCAAGCTGAACAATCTGCTAAGAAGAAAAAGCTTAAAATCTGGGAGAATTATGTTGAAGGGGAAGAAGTATCTAATGGTGCGACACCTGTTGAAAACAAACAACAGGAAGTGCTTAAGGTTATTGTCACAGAAGTCTTGGGTGGTGGCAAATTCTATGTACAAACTGTTGGAGATCAAAAGATAGCATCCATTCAGCAGCAGCTTGCATCTTTGAACCTTAAGGATGCTCCAGTGGTCGGTGCTTTCAATCCCAAGAAGGGTGACATAGTCCTTTGTCATTTTCTTGCCGATGACTCTTGGTATCGAGCAATGGTTGTCAATACACCTCGGGGACCAGTTGAATCTCCAAAGGACAAATTTGAGGTGTTTTACATTGATTATGGTAACCAAGAAGAAGTAACATTCAGTCAGTTACGACCTCTTGATCCATCTGTTTCTTCTGCACCCGGTCTTGCTCAATTGTGCAGCCTTGCATACATTAAGGTTCCAAACTTGGAAGAGGATTTCGGCCAAGAAGCAGCCGAATATTTGAGCGAACTCACTTTGAGCAGTGGAAAAGAGTTCAGGGCCAAGGTTGAAGACAAAGATATTTCTGGTGGAAAAACTAAAGGTCAGGGTACCGGATCAGTCCTCGCAGTTACACTAGTTGCCGTGGACGCCGAGATCAGTGTTAATGCTGCTATGCTAGAGCAAGGACTTGGTAGGATAGAGAAAAGAAGCAGGTGGGACAAAAAAGATAGGCAGCTAGCCCTTGATAATTTGGAGCAGTTCCAGAGTGAAGCGAAGACTAGCCGTCACGGAATTTGGCAGTATGGAGACATTCAATCTGACGATGAAGACTCCGCTCCTCCTCCAAGAAAGGCCGGCGGCCGGAGATAA 2979 0.4565 MASAAAGPGWFRGRVKAVPSGDCLVIVALSSSKPGRLPEKTLTLSSLIAPRLARRGGVDEPFAWESREFLRKLCIGKEVIFKVDYTVPSIGREFGSVMLGDKNVSLLVVSQGWAKVREQGQQKGEASPYLAELLQLEEQAKQEGLGRWSKVPGAAEASIRNLPPSALGGDDSKFNAMALLDAKKGVPMEAIVEQVRDGSTLRIYLLPEFQFVQVFVAGIQAPQMGRRAPSESVVESELTTDDTNGNGDAAGETRAPLTSAQRLAASASIETSADPFAHEAKFFTEMRVLNRDVRIVLEGVDKYKNLIGSVYYSDGDSAKDLALELVENGYAKYVEWSANMMEEEAKRKLKNAELQAKKSRLRCWTNYVPPVTNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGSPLAERRVNLSSIRCPKMGNPRRDEKPAAYAREAKEFLRTRLIGKQVNVQMEYSRKIAPTDGSAPSGGADNRVMDFGSVFLLSNAKPGGGDDAPSSAPPTASQQTGVNVAELVVARGFGTVIRHRDFEERSNYYDVLLAAEARATSSKKGIHSNKDSPVMHITDLTTSSSKKARDFLPFLHKSRKIPAVVEYVLSGHRFKLLIPKETCSIAFSFSGVRCPGRGEPYSEEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNVALTLLEAGLAKLQTSFGGDRIPDFHLLEQAEQSAKKKKLKIWENYVEGEEVSNGATPVENKQQEVLKVIVTEVLGGGKFYVQTVGDQKIASIQQQLASLNLKDAPVVGAFNPKKGDIVLCHFLADDSWYRAMVVNTPRGPVESPKDKFEVFYIDYGNQEEVTFSQLRPLDPSVSSAPGLAQLCSLAYIKVPNLEEDFGQEAAEYLSELTLSSGKEFRAKVEDKDISGGKTKGQGTGSVLAVTLVAVDAEISVNAAMLEQGLGRIEKRSRWDKKDRQLALDNLEQFQSEAKTSRHGIWQYGDIQSDDEDSAPPPRKAGGRR* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2308 992 SUPERFAMILY Staphylococcal nuclease 185 370 IPR035437 -
Amo08g2308 992 SMART TUDOR_7 782 846 IPR002999 -
Amo08g2308 992 Gene3D - 178 377 IPR035437 -
Amo08g2308 992 ProSiteProfiles Thermonuclease domain profile. 9 150 IPR016071 -
Amo08g2308 992 ProSiteProfiles Tudor domain profile. 783 848 IPR002999 -
Amo08g2308 992 ProSiteProfiles Thermonuclease domain profile. 186 366 IPR016071 -
Amo08g2308 992 MobiDBLite consensus disorder prediction 226 256 - -
Amo08g2308 992 SUPERFAMILY Tudor/PWWP/MBT 776 860 - -
Amo08g2308 992 CDD TUDOR 787 840 IPR002999 -
Amo08g2308 992 ProSiteProfiles Thermonuclease domain profile. 380 559 IPR016071 -
Amo08g2308 992 Pfam Tudor domain 735 858 IPR002999 -
Amo08g2308 992 Gene3D - 378 567 IPR035437 -
Amo08g2308 992 Gene3D - 9 154 IPR035437 -
Amo08g2308 992 SUPERFAMILY Staphylococcal nuclease 583 717 IPR035437 -
Amo08g2308 992 Gene3D - 756 852 - -
Amo08g2308 992 PANTHER RIBONUCLEASE TUDOR 1 2 984 - -
Amo08g2308 992 SUPERFAMILY Staphylococcal nuclease 7 150 IPR035437 -
Amo08g2308 992 Gene3D - 740 972 IPR035437 -
Amo08g2308 992 MobiDBLite consensus disorder prediction 960 992 - -
Amo08g2308 992 ProSiteProfiles Thermonuclease domain profile. 589 716 IPR016071 -
Amo08g2308 992 Coils Coil 342 362 - -
Amo08g2308 992 SMART SNASE_2 380 559 IPR016071 -
Amo08g2308 992 SMART SNASE_2 9 150 IPR016071 -
Amo08g2308 992 SMART SNASE_2 589 716 IPR016071 -
Amo08g2308 992 SMART SNASE_2 186 366 IPR016071 -
Amo08g2308 992 Gene3D - 570 714 IPR035437 -
Amo08g2308 992 SUPERFAMILY Staphylococcal nuclease 377 562 IPR035437 -
Amo08g2308 992 PIRSF RISC-Tudor-SN 1 983 IPR016685 GO:0016442|GO:0031047
Amo08g2308 992 Pfam Staphylococcal nuclease homologue 270 365 IPR016071 -
Amo08g2308 992 Pfam Staphylococcal nuclease homologue 43 150 IPR016071 -
Amo08g2308 992 Pfam Staphylococcal nuclease homologue 863 970 IPR016071 -
Amo08g2308 992 Pfam Staphylococcal nuclease homologue 618 716 IPR016071 -
Amo08g2308 992 SUPERFAMILY Staphylococcal nuclease 794 977 IPR035437 -
Amo08g2308 992 PANTHER EBNA2 BINDING PROTEIN P100 2 984 - -
Amo08g2308 992 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2308 Amo-Chr8 36481389 36487106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2308 K15979 - gmx:100794481 1688.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3623 13 122996032 123002952 Amo08g2308 08 36481389 36487106 PCT
Amo03g2687 03 115355262 115362163 Amo08g2308 08 36481389 36487106 PCT