Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g01924 | ATGATGAAATATGATCCAAAGCTTGAACCATTTCAAGATCGTTGGAGAATGGCATCAGCGGCTAGTGGCGCCACGGGATGGTACAGGGGAAGGGTGAAGGCTGTTCCTTCTGGCGATTGTTTGGTCATTGTGGCAATTTCCAGCACCAAACCTGGTCCTTTGCCTGAAAAGACCATTACTCTATCTTCTTTGATGGCACCTAGACTGGCGCGTAGAGATGGTGTGGACGAGCCATTTGCATGGGAAAGTAGGGAATTTCTGAGAAAGCTCTGTATTGGGAAGGAGGTGACCTTCAGAGTGGACTACAACGTGCCAGCCATAAATCGAGACTTCGGAACTGTTTTTCTCGGGGATAAAAATGTTGCTGTGTTGGTTGTTTCCCAAGGATGGGTTAAGATAAGGGAACAGGGGCAGCGGAAAGGTGAAGCAAGTCCATACTTGGCAGAATTGTTACGCCTGGAAGAACAAGCTAAACAAGATGGCCTTGGCCGGTGGAGCAAGGTTCCTGGTGCTGCTGAGGCATCAATCAGAAACCTACCACGTTCAGCCATTGGTGACCCTAGTAACTTGGATGCTATGGGTTTGTTAGCCGCAAACAAGGGATTGCCCATGGAGGCAATTGTTGAGCAGATTCGTGATGGCAGTACTCTCCGAATCTATTTGCTCCCACATTTTCAGTTTGTCCAAGTTTTTGTTGCCGGAATTCAGTCCCCACAAATGGGGAGGAGAGCTGCACCTGAAAGTCTTGTTGAATCGGAATTGGCATCTGATGACACCAATGTAGATGTTTCTGGGGAACCTCGAGCTACACTTACATCTGCACAAAGACTCGCGGTTTCAACAGCTACTGAAGCTGCTGCTGATCCTTTTGCACATGATGCTAAATTTTTCACTGAGACGCGTGTATTGAATCGAGATGTTCGGATTGTCTTGGAAGGTGTTGACAAGTTCAGCAATTTAATTGGATCAGTGTATTATCCTGACGGTGAATCCGCAAAGGACCTGGCATTGGAACTTGTAGAGAATGGTTATGCAAAATATGTTGAATGGAGTGCAAACATGATGGAAGAAGAGGCAAAGCGAAAGCTGAAAACTGCGGAGCTACAGGCTAAGAAAAACAGGTTAAGGATGTGGACAAACTATGTACCACCACCTTCCAATTCAAAGGCAATTCATAATCAGAATTTTTCTGGCAAGATTGTTGAGGTTGTGAGTGGAGATTGTATTGTTGTTGCTGATGATTCCATTCCATATGGTAGTCCACTAGCCGAGAGACGAGTTAACCTTTCAAGTATCAGGTGTCCAAAAATGGGCAATCCTCGTCGGGATGAGAAACCAGCTCCTTATGCCCGTGAAGCAAAGGAGTTCTTGAGAACACGCCTTATTGGTCATCAAGTCAATGTTCAGATGGAATATTCTAGAAAGGTTTCTCCCACAGATGGATCTGTAGTTCCATCAGCAGCTGCTGATTCCAGAGTAATGGATTTTGGATCGGTCTTCTTATTGTCCACTGCAAAGGTTGACAATGGTGATGCTGTGTCATCTGCTCCACCTTCTGGAAATCAGCAAAATGGGGTGAATGTCGCGGAATTGATAGTTGGTCGTGGTTTTGGAACTGTCATTAGACATCGTGACTTTGAAGAGAGATCTAACTATTATGATGCACTTCTTGCTGCTGAATCACGTGCTATTGCGGGAAGAAAAGGCATCCACTCTGCCAAGGATCCCCCAGTGATGCATATAACTGACTTGACCGTGGTAAACAAAAATATAGTTAAGAAAGCCAAAGACTTTTGTCCTTTCCTGAAAAGAAGTAGAAGAGTTCCCGCTGTTGTGGAATATGTGCTCAGTGGTCATCGTTTTAAAGTGCTGATTCCTAAAGAAACTTGCAGCATTGCTTTCTCTTTTTCTGGAGTCAGGTGTCCAGGTCGTGATGAACCATATTCTGATGAAGCAATTGCTTTGATGAGGAGAAAAATAATGCAAAGAGATGTTGAGATTGAGGTTGAAACTGTTGATAAAACTGGAACATTCTTGGGATCCTTATGGGAGTCGAGAATCAATGTAGCATCTACTCTGCTCGAAGCTGGTCTTTCAAAACTCCAAACATCCTTTGGCACTGATAGAATTCCTGATTTTCATCTTCTGCAGCAAGCTGAACAATCTGCCAAGAGGCAGAAGCTGAAAATATGGGAGAATTTTGTCGAAGGAGAGGAAGTATCCAATGGTGCAGTTGTTGAAAACAAACAGCAAGAAGTGCTTAAGGTAATTGTTACAGAAGTCTTGGGCGGTGGCAAATTTTATGTCCAGACAGTTGGAGATCAAAAGATCGCATCCATTCAACAACAGCTAGCTTCTTTGAATCTGAAGGATGCTCCTGTGATTGGTGCTTTCAATCCTAAGAAGGGCGACATAGTCCTTTGTTATTTTCTTGCTGACAAGTCTTGGTACCGGGCCATGGTTGTTAACACCCCTCGGGGACCAGTTCAATCCCCCAGTGACATGTTTGAAGTATTTTACATTGATTATGGAAATCAAGAAGCAGTGCCCTACAGTCAGCTACGGCCTGTTGATCCATCTGTGTCTGCTGCACCTGGGCTTGCTCAACTGTGCAGCCTTGCTTACATCAAGATTCCAAACTTGGAAGAGGATTTTGGGCAAGAAGCAGCTGAATATTTGAGTGAACTGACTTTAAACAGTGGAAAAGAGTTCAGGGCGAAGGTTGAGGAGAAAGACAGTTCAGGAGGAAAAGTTAAAGGGCAGGGAACTGGGACAATTCTTGGCGTAACTCTTGTTGCTGTGGATGCCGACATCAGCGTTAATGCTGCCATTCTACAGGAAGGGCTTGCTAGGACTGAAAAAAGAAATAGGTGGGACAGAAAAGAACGGCAGTCAGCTATTGATAATTTGGAGAATTTCCAGGAAGAAGCAAAGAGCAGCAGACGTGGCATATGGCAGTATGGAGACATTCAGTCAGACGAGGAGGACACTGCTCCTCCTCCTAGAAAGGGTGGTGGTCGGAGATGA | 3027 | 0.4486 | MMKYDPKLEPFQDRWRMASAASGATGWYRGRVKAVPSGDCLVIVAISSTKPGPLPEKTITLSSLMAPRLARRDGVDEPFAWESREFLRKLCIGKEVTFRVDYNVPAINRDFGTVFLGDKNVAVLVVSQGWVKIREQGQRKGEASPYLAELLRLEEQAKQDGLGRWSKVPGAAEASIRNLPRSAIGDPSNLDAMGLLAANKGLPMEAIVEQIRDGSTLRIYLLPHFQFVQVFVAGIQSPQMGRRAAPESLVESELASDDTNVDVSGEPRATLTSAQRLAVSTATEAAADPFAHDAKFFTETRVLNRDVRIVLEGVDKFSNLIGSVYYPDGESAKDLALELVENGYAKYVEWSANMMEEEAKRKLKTAELQAKKNRLRMWTNYVPPPSNSKAIHNQNFSGKIVEVVSGDCIVVADDSIPYGSPLAERRVNLSSIRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGHQVNVQMEYSRKVSPTDGSVVPSAAADSRVMDFGSVFLLSTAKVDNGDAVSSAPPSGNQQNGVNVAELIVGRGFGTVIRHRDFEERSNYYDALLAAESRAIAGRKGIHSAKDPPVMHITDLTVVNKNIVKKAKDFCPFLKRSRRVPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRDEPYSDEAIALMRRKIMQRDVEIEVETVDKTGTFLGSLWESRINVASTLLEAGLSKLQTSFGTDRIPDFHLLQQAEQSAKRQKLKIWENFVEGEEVSNGAVVENKQQEVLKVIVTEVLGGGKFYVQTVGDQKIASIQQQLASLNLKDAPVIGAFNPKKGDIVLCYFLADKSWYRAMVVNTPRGPVQSPSDMFEVFYIDYGNQEAVPYSQLRPVDPSVSAAPGLAQLCSLAYIKIPNLEEDFGQEAAEYLSELTLNSGKEFRAKVEEKDSSGGKVKGQGTGTILGVTLVAVDADISVNAAILQEGLARTEKRNRWDRKERQSAIDNLENFQEEAKSSRRGIWQYGDIQSDEEDTAPPPRKGGGRR | 1008 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g01924 | 1008 | SUPERFAMILY | Staphylococcal nuclease | 201 | 385 | IPR035437 | - | |
| Phco7g01924 | 1008 | PANTHER | EBNA2 BINDING PROTEIN P100 | 68 | 988 | - | - | |
| Phco7g01924 | 1008 | CDD | Tudor_AtTudor1-like | 764 | 879 | IPR047395 | - | |
| Phco7g01924 | 1008 | ProSiteProfiles | Thermonuclease domain profile. | 873 | 987 | IPR016071 | - | |
| Phco7g01924 | 1008 | FunFam | Ribonuclease | 26 | 172 | - | - | |
| Phco7g01924 | 1008 | FunFam | Serine/threonine-protein kinase 31 | 771 | 868 | - | - | |
| Phco7g01924 | 1008 | SUPERFAMILY | Staphylococcal nuclease | 391 | 577 | IPR035437 | - | |
| Phco7g01924 | 1008 | Gene3D | - | 392 | 581 | IPR035437 | - | |
| Phco7g01924 | 1008 | Gene3D | - | 26 | 171 | IPR035437 | - | |
| Phco7g01924 | 1008 | FunFam | Ribonuclease | 867 | 988 | - | - | |
| Phco7g01924 | 1008 | Gene3D | - | 772 | 868 | - | - | |
| Phco7g01924 | 1008 | ProSiteProfiles | Thermonuclease domain profile. | 606 | 733 | IPR016071 | - | |
| Phco7g01924 | 1008 | ProSiteProfiles | Thermonuclease domain profile. | 202 | 380 | IPR016071 | - | |
| Phco7g01924 | 1008 | SMART | TUDOR_7 | 798 | 862 | IPR002999 | - | |
| Phco7g01924 | 1008 | SUPERFAMILY | Staphylococcal nuclease | 809 | 993 | IPR035437 | - | |
| Phco7g01924 | 1008 | Gene3D | - | 756 | 988 | IPR035437 | - | |
| Phco7g01924 | 1008 | MobiDBLite | consensus disorder prediction | 970 | 1008 | - | - | |
| Phco7g01924 | 1008 | ProSiteProfiles | Thermonuclease domain profile. | 394 | 573 | IPR016071 | - | |
| Phco7g01924 | 1008 | Coils | Coil | 354 | 376 | - | - | |
| Phco7g01924 | 1008 | Pfam | Tudor domain | 751 | 874 | IPR002999 | - | |
| Phco7g01924 | 1008 | Gene3D | - | 588 | 731 | IPR035437 | - | |
| Phco7g01924 | 1008 | Pfam | Staphylococcal nuclease homologue | 58 | 167 | IPR016071 | - | |
| Phco7g01924 | 1008 | Pfam | Staphylococcal nuclease homologue | 880 | 986 | IPR016071 | - | |
| Phco7g01924 | 1008 | Pfam | Staphylococcal nuclease homologue | 284 | 379 | IPR016071 | - | |
| Phco7g01924 | 1008 | Pfam | Staphylococcal nuclease homologue | 635 | 733 | IPR016071 | - | |
| Phco7g01924 | 1008 | Gene3D | - | 194 | 391 | IPR035437 | - | |
| Phco7g01924 | 1008 | FunFam | Ribonuclease | 392 | 581 | - | - | |
| Phco7g01924 | 1008 | PIRSF | RISC-Tudor-SN | 17 | 999 | IPR016685 | GO:0016442|GO:0031047 | |
| Phco7g01924 | 1008 | SUPERFAMILY | Staphylococcal nuclease | 25 | 167 | IPR035437 | - | |
| Phco7g01924 | 1008 | SMART | SNASE_2 | 606 | 733 | IPR016071 | - | |
| Phco7g01924 | 1008 | SMART | SNASE_2 | 394 | 573 | IPR016071 | - | |
| Phco7g01924 | 1008 | SMART | SNASE_2 | 26 | 167 | IPR016071 | - | |
| Phco7g01924 | 1008 | SMART | SNASE_2 | 202 | 380 | IPR016071 | - | |
| Phco7g01924 | 1008 | ProSiteProfiles | Tudor domain profile. | 799 | 864 | IPR002999 | - | |
| Phco7g01924 | 1008 | ProSiteProfiles | Thermonuclease domain profile. | 26 | 167 | IPR016071 | - | |
| Phco7g01924 | 1008 | SUPERFAMILY | Staphylococcal nuclease | 600 | 733 | IPR035437 | - | |
| Phco7g01924 | 1008 | FunFam | Ribonuclease | 586 | 731 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g01924 | Phco-Chr7 | 23691749 | 23698227 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco4g03185 | 4 | 52576030 | 52581523 | Phco7g01924 | 7 | 23691749 | 23698227 | PCT |