Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1647 ATGTCGAGATATTACTCGAACATGAAGAAAGTGTACAACCTACACGCCACGCTAATCAAACGTGGCCAACACGAGAACCCTCTCTCCCTCCGTCCCTTCATTCTCCACTGCGCCAACTCATCATCACCCCCCGACACCGCCCGTTACGCCGCCTCAGTGCTCCTCCGTTTCCCCATCCCCGGCGACACCTTCACCTACAACGCCATCATCCGCCACCTGGCACTCCACGCTCCCTCCCTCGCCCTCCTCCTCTTCTCCCACATGCACCGCACCAATATCCCCTTCGATCACTTCACCTTCCCCCTCATCCTCAAACCCTCCAAATTAAACCCCCACAGCATCCACTCCGTCGTTCTCAAACTCGGTTTCTACTCCTCCATTTACGTCCAAAACGCCCTTATAAACTCCTACGGAACCTCCGGCTCCCTCCACGTCTCCCTTAAACTGTTCGATGAAATCTCCCACCCAGACTTGGTCTCTTGGTCCTCTTTAATCTCCTCTTTCGCCAAACACGGGTTCCCCCATGAAGCCCTTACGCTCTTCCAACAAATGCAGCTCCGCCACACTGATATCCTACCCGACGGGGTCATCATGCTTAGTGTGCTATCCGCTGTTTCCAGCCTAGGTGCCTTGGAATTAGGTATCTGGGTTCACGCTTTTATTTCCAGAACTGGGCTTAACTTTACTGTCCCATTAGGTACTGCACTTATTAACATGTATTCTCGATGCGGGGACATTGATCGTTCTGTTAAGGTGTTTGATGAAATACCTCACAGGAATGTGGTAACATGGACTGCGCTGATTAACGGGCTTGCCGTTCATGGACGTGGTAGGGAGGCTTTAGAGGCCTTTTATGATATGGTGGAGTCTGGTTTGAAGCCTGATTGTGTTGCGTTTATGGGTGCATTGGTGGCTTGTAGTCATGGTGGGTTTGTGGAGGAGGGGCAGCAGGTTTTTCAGGGCATGTGGAGTAAGTATGGTGTTGAACCGGCGCTTGAGCATTATGGTTGTATGGTTGATCTTCTTGGCCGCGCAGGCAAGCTGCTTGAAGCTTTTGAGTTTGTGGAGAGGATGCGTGTTAAGCCAAATTCGATTATTTGGAGGACTTTGCTTGGGGCATGTGTGAATCACAATCATCTTGGGCTGGCTGAGAAGGCCAAGGAGAGGATCAAGGAGTTGGACCCTCATCATGATGGTGATTATGTGCTTTTGTCAAACGCTTATGGTGGAGTTGGTAACTGGGTTGAGAAGGAGGGGGTGAGGAATTCAATGAGGGAGCTTAGGATTGTTAAGGAACCTGGCCGTAGTTTGGTTCACATTGATCAAGTGGTTCATGAGTTTTTGTCTGGAGATAATTCTCATCCGAATTGGGAGGAGATTACAAGATTTCTGGGTTCAATTATTGACACAGTAAAACTTGGAGGTTACACCCCTATTACTTCTAATGTGCTGCATGACATTCAAGAGGAAGAGAAGGAGCATTGTCTAGGCTATCACAGTGAGAAATTAGCAGTGGCTTTTGTTCTTCTTTTTCATAGGGATAGAAAGACCATTAGGATCATTAAGAACCTTAGAATTTGTTATGACTGTCATAGTTTCATGAAGCACGTTTCAGGTTTCTTTGATAGATGTATTGTCATTAGGGATCGAAGTCGGTTCCACCATTTTAGCAAGGGATCATGCTCTTGCAGAGATTTTTGGTAA 1704 0.48 MSRYYSNMKKVYNLHATLIKRGQHENPLSLRPFILHCANSSSPPDTARYAASVLLRFPIPGDTFTYNAIIRHLALHAPSLALLLFSHMHRTNIPFDHFTFPLILKPSKLNPHSIHSVVLKLGFYSSIYVQNALINSYGTSGSLHVSLKLFDEISHPDLVSWSSLISSFAKHGFPHEALTLFQQMQLRHTDILPDGVIMLSVLSAVSSLGALELGIWVHAFISRTGLNFTVPLGTALINMYSRCGDIDRSVKVFDEIPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDCVAFMGALVACSHGGFVEEGQQVFQGMWSKYGVEPALEHYGCMVDLLGRAGKLLEAFEFVERMRVKPNSIIWRTLLGACVNHNHLGLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVEKEGVRNSMRELRIVKEPGRSLVHIDQVVHEFLSGDNSHPNWEEITRFLGSIIDTVKLGGYTPITSNVLHDIQEEEKEHCLGYHSEKLAVAFVLLFHRDRKTIRIIKNLRICYDCHSFMKHVSGFFDRCIVIRDRSRFHHFSKGSCSCRDFW* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1647 567 Pfam PPR repeat 131 153 IPR002885 -
Pvu9g1647 567 Pfam PPR repeat 334 360 IPR002885 -
Pvu9g1647 567 Pfam PPR repeat 159 185 IPR002885 -
Pvu9g1647 567 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 47 524 - -
Pvu9g1647 567 Pfam DYW family of nucleic acid deaminases 475 567 IPR032867 GO:0008270
Pvu9g1647 567 Gene3D Tetratricopeptide repeat domain 59 206 IPR011990 GO:0005515
Pvu9g1647 567 Pfam PPR repeat family 259 299 IPR002885 -
Pvu9g1647 567 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 47 524 - -
Pvu9g1647 567 TIGRFAM PPR: pentatricopeptide repeat domain 159 186 IPR002885 -
Pvu9g1647 567 TIGRFAM PPR: pentatricopeptide repeat domain 262 296 IPR002885 -
Pvu9g1647 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Pvu9g1647 567 Pfam E motif 377 438 IPR046848 -
Pvu9g1647 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Pvu9g1647 567 Gene3D Tetratricopeptide repeat domain 323 396 IPR011990 GO:0005515
Pvu9g1647 567 Gene3D Tetratricopeptide repeat domain 207 322 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1647 Pvu-Chr9 23119326 23121358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1647 81 567 Glycoside Hydrolase AT3G49170 38.229 7.29e-111 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1647 - - vun:114182185 1011.91