Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04775 ATGCAAGTTTCTTCTTCATCGATTAACCCACGTTTCGTTACTCTCACTTCCAACCGCTTCCGACGCATCTCATCGGAACCATGCTCCACCACCACCGCCGCCGCGGCGGCGGCGGCATACTCGCGTTCTGTTCACAATAACAATTCTCTCTCATTTCTTACATCTCAAAAAAACGTATCCAGTTCTTTCACATCACTTTCAACACGAACAACAAAATCAACGAGAAGAAGAAGAAGAACACGAGTTTTCACCGTAACTGCTTTATTCGAACGATTCACAGAAAGATCAATTAAAACGATAGTATATGCAACAAAAGAAGCTAAATCATTCAAGAGCGATTTCGTTTACGCACAGCATATCATGCTTGGTCTTATAGCTGAAGCTGATGAAACAAATCGTTCTCAGAACGGTTTTCTTGATTCTCCTGTAGTTACTCTTGAGAAAGCTCGTGATGCTGTTCGTCATTTGAATGATTCAACTGATTATGTTGATGATGATGGTGTTTATGTTTATCAAGATAGACCTGTTCCGTTTTCTTTTGGTGCCAAGCGTGTGTTTGAAGCTGCTGCTGATTATTCGAAATCTTTGGGGCATAATTTTGTTGATCCTGAACATATTTTGGTTGCTATAATCAAAGTTGATGATGGAAGTTCTGCTCGAATTCTTTATAGACTCGGGACAAACCCAGATCAATTGGCAGCTGTGGCGTATTCCAGAATACAGAAAGAGCTTGCCAGAGATGGTAGAGAGCTGGGTTATCAGTCCAATGGCATGAACAACAAATCTATTTCAAAAAAGCCCGATGCAGGATCCGCCACCAAAACAAAAGAGAAGACCGCTCTATCGCAGTTCTGCGTAGATCTCACTGCTCGCGCAAGTTTAGGACTAATTGATCCAGTTATTGGCCGAGAAGTTGAAGTTCATAGAATTATTCAAATACTATGCCGAAAAACAAAAAGCAATCCCATTCTTCTGGGTGAAGCTGGAGTTGGAAAAACAGCTATTGCGGAGGGGCTGGCAAATCGTATTTCTCGGGCAGATGTTGCTCCCTTTCTGTTGACAAAACGTGTTATGTCCTTGGATGTAGCATCATTAATGGCCGGGGCAAAAGAGAGAGGAGAGCTAGAGGATCGTGTTACAAAGTTAATAAAAGAAATAATAAAATCAGGTGATGTCATTCTTTTCATTGACGAAGTTCATACACTTGTTCAATCAGGGACATCCGGGAGGGGAAATAAGGGTTCTGGCTTTGACATTGCTAATTTGCTTAAACCTGCACTTGGAAGGGGTCAGTTTCAGTGTATTGCATCTACCACAACAGATGAATACAGGCTTCATTTTGAAAAGGATAAGGCTTTGGCACGGCGGTTTCAACCTGTTTGGATTGATGAGCCGAGTGAGGATGATGCAATTAAGATACTTATGGGTATACGTGACAAGTATGAGGCACACCACAAATGCAGATATACAGAAGATGCCATAAAGGCTGCAGTTCATTTGTCATCAAGATACATAGTTGATAGATATCTACCTGATAAAGCTATTGACCTCATAGATGAAGCAGGAAGTAAAGCTTCTATTGAAGCCTTTAAGATGAAAAAAGAACAAAACAATTACATACTTTCAAAAGACCCGGAAGATTATTGGAGAGAAATTAGAACCGTTCAGTCCACGCTTAAAATGGTTCAGGAGAGCAAGCTTAAATATTATGGTGCATCTGGCATTGAGGATACCGGTGAACTCATACTAGACTCGTATTTAACATCTGCAGCAATTGATAATGAACGTATAGAAGTTCGGCCTGATCATATAGCAGAAGTTGCTTCCCTCTGGTCAGGAATTCCAGTTAAGCAGCTCACTGCTGATGAAAGAAGTCTTCTGTTAGACCTTGATAATAAACTTCGGGAACGTGTGATTGGACAAGAGGAAGCTGTTTCTTCCATTTCTAGATCTGTGAAGAGATCCCGTGTTGGCCTTAAGGATCCCAGTAGACCCATAGCAACTTTGCTATTCTGTGGCCCAACTGGCGTTGGGAAAACAGAACTTGCAAAATCTTTGGCGGCATGCTATTTTGGATCGGAGACGAACATGATACGGTTAGACATGAGTGAATATATGGAACGCCATTCAGTGAGCAAGTTGATAGGATCTCCCCCAGGATATGTTGGTTATGGAGAAGGGGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTTACAGTGTTATTGTTTGATGAAATAGAGAAAGCTCATCCAGATGTATTCAACATTCTTCTTCAATTACTGGAAGATGGCCATCTTACTGATTCGCAGGGTCGAAGAGTTTCATTTAAAAATGCATTGGTGGTGATGACTTCAAATGTGGGGTCTAGTGCCATTGCTAAGGGTCAACACAACTCCATAGGTTTCTTCATTGCAGATGACAAACCAGCATCATACAATGGATTGAAATCAATGGTAATCGAAGAATTGAGGACATATTTTCGTCCAGAACTGCTCAACAGGATAGATGAAGTGGTGGTCTTTCATCCTCTTGAAAAACCACAGTTGCTCCAAATATTGGAATTGCTGCTGCAAGACTTGAAGAAAAGGGCTATGCCCCAAGGAATTGATTTAGAGGTGTCTGAATCAGTCAAGGACCTTGTCTGCACTGAAGGCTATGACACTGCATATGGTGCTAGGCCTCTCAGGAGGGCCATTGTAAATATAATTGAAAACCCATTGACTGAAGCATTGCTTGCTGAAAAGTTCAAGAAAGGTGACACTGCCTTCATTGATTTGGATGCCAATGGTAATACCCTCGTTGTAAATCAGCTTGATCAGACAGTTAATAACTTATCCGACATAAGTCATCTCTGA 2859 0.4134 MQVSSSSINPRFVTLTSNRFRRISSEPCSTTTAAAAAAAYSRSVHNNNSLSFLTSQKNVSSSFTSLSTRTTKSTRRRRRTRVFTVTALFERFTERSIKTIVYATKEAKSFKSDFVYAQHIMLGLIAEADETNRSQNGFLDSPVVTLEKARDAVRHLNDSTDYVDDDGVYVYQDRPVPFSFGAKRVFEAAADYSKSLGHNFVDPEHILVAIIKVDDGSSARILYRLGTNPDQLAAVAYSRIQKELARDGRELGYQSNGMNNKSISKKPDAGSATKTKEKTALSQFCVDLTARASLGLIDPVIGREVEVHRIIQILCRKTKSNPILLGEAGVGKTAIAEGLANRISRADVAPFLLTKRVMSLDVASLMAGAKERGELEDRVTKLIKEIIKSGDVILFIDEVHTLVQSGTSGRGNKGSGFDIANLLKPALGRGQFQCIASTTTDEYRLHFEKDKALARRFQPVWIDEPSEDDAIKILMGIRDKYEAHHKCRYTEDAIKAAVHLSSRYIVDRYLPDKAIDLIDEAGSKASIEAFKMKKEQNNYILSKDPEDYWREIRTVQSTLKMVQESKLKYYGASGIEDTGELILDSYLTSAAIDNERIEVRPDHIAEVASLWSGIPVKQLTADERSLLLDLDNKLRERVIGQEEAVSSISRSVKRSRVGLKDPSRPIATLLFCGPTGVGKTELAKSLAACYFGSETNMIRLDMSEYMERHSVSKLIGSPPGYVGYGEGGILTEAIRRKPFTVLLFDEIEKAHPDVFNILLQLLEDGHLTDSQGRRVSFKNALVVMTSNVGSSAIAKGQHNSIGFFIADDKPASYNGLKSMVIEELRTYFRPELLNRIDEVVVFHPLEKPQLLQILELLLQDLKKRAMPQGIDLEVSESVKDLVCTEGYDTAYGARPLRRAIVNIIENPLTEALLAEKFKKGDTAFIDLDANGNTLVVNQLDQTVNNLSDISHL 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04775 952 MobiDBLite consensus disorder prediction 253 274 - -
Trre5g04775 952 Pfam Clp amino terminal domain, pathogenicity island component 189 234 IPR004176 -
Trre5g04775 952 Pfam Clp amino terminal domain, pathogenicity island component 103 128 IPR004176 -
Trre5g04775 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 552 IPR027417 -
Trre5g04775 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 928 IPR027417 -
Trre5g04775 952 Pfam C-terminal, D2-small domain, of ClpB protein 845 923 IPR019489 -
Trre5g04775 952 MobiDBLite consensus disorder prediction 251 274 - -
Trre5g04775 952 ProSitePatterns Chaperonins clpA/B signature 2. 699 717 IPR028299 -
Trre5g04775 952 CDD RecA-like_ClpB_Hsp104-like 627 842 - -
Trre5g04775 952 FunFam ATP-dependent Clp protease subunit 618 843 - -
Trre5g04775 952 Gene3D - 91 250 IPR036628 -
Trre5g04775 952 Pfam AAA lid domain 466 564 IPR041546 -
Trre5g04775 952 ProSitePatterns Chaperonins clpA/B signature 1. 418 430 IPR018368 GO:0005524
Trre5g04775 952 Gene3D - 845 946 - -
Trre5g04775 952 Gene3D - 466 557 - -
Trre5g04775 952 Gene3D - 268 465 IPR027417 -
Trre5g04775 952 SUPERFAMILY Double Clp-N motif 90 238 IPR036628 -
Trre5g04775 952 PANTHER ATP-DEPENDENT CLP PROTEASE 93 937 - -
Trre5g04775 952 SMART ClpB_D2_small_2 845 936 IPR019489 -
Trre5g04775 952 Pfam ATPase family associated with various cellular activities (AAA) 323 440 IPR003959 GO:0005524|GO:0016887
Trre5g04775 952 CDD AAA 301 458 - -
Trre5g04775 952 Gene3D - 595 844 IPR027417 -
Trre5g04775 952 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 669 687 IPR001270 GO:0005524
Trre5g04775 952 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 743 761 IPR001270 GO:0005524
Trre5g04775 952 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 714 732 IPR001270 GO:0005524
Trre5g04775 952 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 776 790 IPR001270 GO:0005524
Trre5g04775 952 Pfam AAA domain (Cdc48 subfamily) 664 839 IPR003959 GO:0005524|GO:0016887
Trre5g04775 952 ProSiteProfiles Clp repeat (R) domain profile. 89 243 IPR004176 -
Trre5g04775 952 SMART AAA_5 318 467 IPR003593 GO:0016887
Trre5g04775 952 SMART AAA_5 665 846 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04775 Trre-Chr5 49586656 49593164 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04775 - - aip:107613298 1255.74