Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06924 ATGCAAGTTTCTTCTTCATCACTTAACCCATGCTTCCCAACTCTCACTTCCAACCGCTTCCTCCGTATTCGCCCACCGGAACCCTCTTCCACCTCCGCTTACTCACCACCTTCTCTCTCGTTTCTTTCATCTCAAAGAAACCGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCACCTTACTCACATCAACAAATACAAAAAGAAGAAGAAGAAGAAGAAGAAGAACGTCCACGTTCACGTTCACCGTAACTTCAATATTCGAACGTTTCACAGAAAGATCAATAAAATCCATAGTCTATGCCGAAAAAGAAGCGAAATTCTTCAAGAGCGATTTCCTTTACGCACAGCATATCATGCTTGGTCTAATAGCTGAAGCTGAAGAGACAAATCGTTCTCAAAACGGTTTTCTTGACTCTGGTGTAGTCACTCTTGAGAAAGCTCGTGATGCTGTTCCTCATCTCAATGATTCAACTAACTACGTTGATGATAATGGTGTTTATGTGTATCAAGATCTACCCGTTCCGTTTTCTTTTGGTACTAAACGTGTTTTTGAAGCTGCTGTTGAGTATTCAAGATCTTTGAACCATAATTTTGTTGATCCTGAACATATTTTCGTTGCTTTGATTAAAGTTGATGATGGAAGTTCTGCTAGAATTCTTTATAGACTCGGGTCAAACCCAGATCAGTTGGCAGCTGTGGCATATTCCAGACTACAAAAAGAGCTGGCTAGAGATGGTCGAGAGCCAGGTTATGTGTCTAATGGGGGGCACAACAAATCTATATCACAAAGGCGTTCTGGTGCAGGATCTGCCGCTAAAACAAAAGATATGAAAGATAAAAAGAGTGCTCTATCACAATTCTGTGTGGATCTCACTGCCCGCGCAAGTGTTGGACTGATTGATCCAGTTATTGGCCGAGAAGCTGAAGTTCAGAGAATTATTCAAATACTATGCCGAAAGACAAAAAGCAATCCAATTCTTCTGGGTGAAGCTGGAGTTGGGAAAACAGCTATTGCGGAGGGACTGGCAATTCTTATTTCTCGGGCAGAAGTTGCTCCTTTTCTATTGACAAAACGTGTCATGTCCTTGGATGTAGGACTATTAATGGCTGGGGCAAAAGAGAGAGGAGAGCTAGAGGACCGCGTTACAAAATTAATAAAAGATATAATAGAGTCAGGTGATGTCATTCTTTTCATTGACGAAGTTCACACACTTGTTCAATCAGGGACAACTGGGAGGGGAAATAAGGGTTCTGGCTTTGACATTGCTAATTTGCTTAAACCCTCACTTGGAAGGGGTCAGTTTCAGTGTATTGCATCTACCACTATTGATGAATACAGGCTTCATTTTGAAAAGGATAAGGCTTTGGCACGGCGGTTTCAACCTGTTTGGATTGATGAGCCGAGTGAGGATGATGCAATTAAGATACTTATGGGTGTACGTGAGAAATATGAAGCACACCACAAGTGCAGATATTCAGAAGATGCCATAAAGGCTGCAGTTCATTTGTCAGCAAGATACATAGTTGATAGGTATCTACCTGATAAAGCTATTGACCTCATTGATGAAGCAGGAAGTAAAGCTTCTATTGAAGCCTTTAAGATGAAAAAAGAACACGATTATTGCATACTCTCTAAAAGCCCGGATGACTATTGGAGAGAAATTAGAACTGTTCAGTCCACGCTTAAAATGGTTCAGGAGAGCATGCTTAAATATTATGGTGCATCTGGCATTGAGGATACCAATGAACTCATACTTGACTCATATTTAACTTCTGCAGCATTTGATAATGAGTGTATAGAAGTTAGGCCTGATCATATAGCAACAGTTGCTTCCCTCTGGTCAGGAATTCCAGTTCAGCAGCTCACTGCTGATGAAAGAAGTCTTCTGTTAGATCTGGATAATAAACTAAGGGAACGTGTGATTGGACAAGAGGAAGCTGTTTCTGCCATTTCTAAATCTGTGAAGAGATCCCGAGTCGGCCTTCAGGATCCCGGTAGACCCATAGCAACTTTACTATTCTGTGGCCCAACTGGCGTTGGGAAAACAGAACTAGCAAAGTCTTTGGCTGCATGCTATTTTGGATCGGAAACAGACATGATAAGGTTAGACATGAGTGAATATATGGAACGCCATTCAGTGAGCAAGTTATTAGGATCTCCCCCAGGTTATGTTGGTTACGGAGAAGGGGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTTACTGTGGTTTTGTTTGATGAAATAGAAAAAGCTCATCCAGATATATTTAACATTCTTCTTCAATTAATGGAAGATGGCCATCTTACCGATTCTCAGGGTCGAAGAGTTTCATTTAAAAATGCATTGGTGGTGATGACTTCAAATGTGGGGTCTAGTGCCATTGCTAAGGGTCGACACAACTCCATAGGTTTCTTCATTTCAGATGACAAACCAACATCATATAATGGATTGAAATCGATGGTAATTGAAGAACTGAGGACATATTTTCGTCCAGAACTGCTCAACAGGATAGATGAAGTGGTGGTGTTTCATCCCCTTGAAAAGCCACAGTTGCTCCAAATATTTGATTTGCTGCTGCAAGACGTGAAAAGGACCATGCCCCGAGGAATTGATTTTGAGGTGTCTGAATCAGTCAAGGACCTTGTCTGTAAGGAAGGCTATGACCCAACATATGGTGCTAGACCTCTCAGGAGAGCCATTGTAAACTTAATTGAAAACCCATTGGCTGAAGCATTGCTTGCTGAAAAGTGCAAGGAAGGTGACACTGTCTTCATTGATTTGGATGCCAATGGTAACACCCTTGTTATAAATCAGCTTGATCAGACAGTCAACTTATCCGACACAAGTCACCCCTGA 2862 0.4133 MQVSSSSLNPCFPTLTSNRFLRIRPPEPSSTSAYSPPSLSFLSSQRNRSSSSSSSSSFTLLTSTNTKRRRRRRRRTSTFTFTVTSIFERFTERSIKSIVYAEKEAKFFKSDFLYAQHIMLGLIAEAEETNRSQNGFLDSGVVTLEKARDAVPHLNDSTNYVDDNGVYVYQDLPVPFSFGTKRVFEAAVEYSRSLNHNFVDPEHIFVALIKVDDGSSARILYRLGSNPDQLAAVAYSRLQKELARDGREPGYVSNGGHNKSISQRRSGAGSAAKTKDMKDKKSALSQFCVDLTARASVGLIDPVIGREAEVQRIIQILCRKTKSNPILLGEAGVGKTAIAEGLAILISRAEVAPFLLTKRVMSLDVGLLMAGAKERGELEDRVTKLIKDIIESGDVILFIDEVHTLVQSGTTGRGNKGSGFDIANLLKPSLGRGQFQCIASTTIDEYRLHFEKDKALARRFQPVWIDEPSEDDAIKILMGVREKYEAHHKCRYSEDAIKAAVHLSARYIVDRYLPDKAIDLIDEAGSKASIEAFKMKKEHDYCILSKSPDDYWREIRTVQSTLKMVQESMLKYYGASGIEDTNELILDSYLTSAAFDNECIEVRPDHIATVASLWSGIPVQQLTADERSLLLDLDNKLRERVIGQEEAVSAISKSVKRSRVGLQDPGRPIATLLFCGPTGVGKTELAKSLAACYFGSETDMIRLDMSEYMERHSVSKLLGSPPGYVGYGEGGILTEAIRRKPFTVVLFDEIEKAHPDIFNILLQLMEDGHLTDSQGRRVSFKNALVVMTSNVGSSAIAKGRHNSIGFFISDDKPTSYNGLKSMVIEELRTYFRPELLNRIDEVVVFHPLEKPQLLQIFDLLLQDVKRTMPRGIDFEVSESVKDLVCKEGYDPTYGARPLRRAIVNLIENPLAEALLAEKCKEGDTVFIDLDANGNTLVINQLDQTVNLSDTSHP 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06924 953 Gene3D - 469 565 - -
Mepo3g06924 953 Pfam ATPase family associated with various cellular activities (AAA) 326 430 IPR003959 GO:0005524|GO:0016887
Mepo3g06924 953 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 764 IPR001270 GO:0005524
Mepo3g06924 953 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 717 735 IPR001270 GO:0005524
Mepo3g06924 953 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 672 690 IPR001270 GO:0005524
Mepo3g06924 953 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 779 793 IPR001270 GO:0005524
Mepo3g06924 953 Gene3D - 270 468 IPR027417 -
Mepo3g06924 953 CDD RecA-like_ClpB_Hsp104-like 630 845 - -
Mepo3g06924 953 Pfam AAA lid domain 469 563 IPR041546 -
Mepo3g06924 953 SUPERFAMILY Double Clp-N motif 88 233 IPR036628 -
Mepo3g06924 953 ProSitePatterns Chaperonins clpA/B signature 1. 421 433 IPR018368 GO:0005524
Mepo3g06924 953 Pfam Clp amino terminal domain, pathogenicity island component 187 232 IPR004176 -
Mepo3g06924 953 Gene3D - 598 847 IPR027417 -
Mepo3g06924 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 930 IPR027417 -
Mepo3g06924 953 Pfam AAA domain (Cdc48 subfamily) 667 842 IPR003959 GO:0005524|GO:0016887
Mepo3g06924 953 SMART AAA_5 668 849 IPR003593 GO:0016887
Mepo3g06924 953 SMART AAA_5 321 470 IPR003593 GO:0016887
Mepo3g06924 953 MobiDBLite consensus disorder prediction 26 75 - -
Mepo3g06924 953 Gene3D - 848 948 - -
Mepo3g06924 953 ProSiteProfiles Clp repeat (R) domain profile. 87 241 IPR004176 -
Mepo3g06924 953 Pfam C-terminal, D2-small domain, of ClpB protein 848 926 IPR019489 -
Mepo3g06924 953 ProSitePatterns Chaperonins clpA/B signature 2. 702 720 IPR028299 -
Mepo3g06924 953 FunFam ATP-dependent Clp protease subunit 621 846 - -
Mepo3g06924 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 540 IPR027417 -
Mepo3g06924 953 MobiDBLite consensus disorder prediction 26 64 - -
Mepo3g06924 953 PANTHER ATP-DEPENDENT CLP PROTEASE 91 940 - -
Mepo3g06924 953 Gene3D - 89 247 IPR036628 -
Mepo3g06924 953 SMART ClpB_D2_small_2 848 938 IPR019489 -
Mepo3g06924 953 MobiDBLite consensus disorder prediction 245 277 - -
Mepo3g06924 953 CDD AAA 304 461 - -
Mepo3g06924 953 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06924 Mepo-Chr3 82886453 82893330 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06924 - - aip:107613298 1267.29