Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02579 ATGAAAAGAGTGTACAAGTTACACGCTACACTGATCAAAACTGGACAACACGACAACCCACACTCTCTCCGCTCCTTCTTCCTTAGCTGCGTACAGTCATCATGTTCCCTCGACACTGCACGCTATGCCGCCTCCGTCTTACTCCGTTTCCCCATACCACCCGACCCATTCTTATACAACACCGTCATCAGACACGTGGCACCCCACTCTCCCACCCTCGCCCTTTCCATATTTTCCCATATGCACCGTAACGCCGTCCCCTTCGACCACTTCACCTTCCCACTTATCCTCAAAcaccacaaccatcaccaccaccTTCATTCCCTCGTTTTCAAACTCGGTTTCGACTCCAACATCTTCGTTCAGAACGCGCTTCTCAACGCTTATGGTTCTCGTGGCTCCATCAACTTTGCAGTCAAACTGTTCGACGAAATGCTTTACAGAGACTTAGTTTCTTGGTCCACGTTAATCGCTTGTTTTGTCAACAACAACCTCCATTTCGAAGCGCTTTCTCTTTTCCAACAAATGCAGTTACGTGACCCTGACATTGGAAATTCATCTGATGGGGTTATCATGTTGAGTGTGATATCTGCGGTTTCGTGTTTAGGTGTGCTTGAATTGGCTATCTGGGTTCATTCTTTCATTGTTAGGATAGGGCTACCACTTACTGTTCCATTGGGTAGTTCTCTTATTAACATGTATTCGAGGTGTGGTTCTATTGATCGTTCTGTCATGGTAtttgatgaaatgcctcacagaaatgtagttacttggactgctttgattaacgggcttgctgtgcatggatgtagtagggaaggtttggaagctttttatgatatgacggaGTCTGGTTTGAAGCCTGATCGGGCTGCATTTATAGCTGCTTTGGTGGCTTGTAGTCATGGTGGTCTTGTGGAGGATGGTTGGCGGGTTTTTAGGAGTATGAGGGATGAGTTTGGAATTGAACCTATGCTTGAGCATTATGGTTGTATGGTTGACCTTCTTGGTCGTGCTGGGCTTCTTGTTGAAGCTTTTGAGTTTGTGGAGGAAATGCCTTTGAAGCCAAATTCTGTTATTTGGAGGACTTTGCTTGGGGCGTGTGTGAATCACAATCATCTTGTGTTGGCTGAAAAGGCTAGAAAAATGGTCAATGAGCTTGACCCACATCATCATGGCGATTATGTGCTTTTATCGAACGCTTATGGTGGAGTTGGCGACTGGGGTGGTAAGGCTGGCTTGAGAAATTCTATGAGGAAGAATAGAATTGTCAAGGAGCCTGGCCTCAGTTTTATCCATATTGATCAAGGGGTCCATGAATTTGTCTCTGGTGATCATTCTCATCCACAATGGGAGGAGATTACAAAATTTTTAGTTTCAGTTATAGATACAGTAAAACTAGGAGGTTACACCCCTAATACTTCCTCCGTGTTACATGATATTCAAGAGGAAGAGAAAGAGCATTGTGTGGGTTATCATAAGATATTATTATTAGAGATCGAAATCGGTTCCATCACTTTAGCGAGGGATCATGTTCTTGCCGAGATTTTTGAGTGCAGTTCTAGGGACATACCAGTATCACATCATCAATTAGTTTCAAGTAACTGGTGGCTCCACAATGGGATTGGAAATTTGGAAATCACTGGTTCTTCTAACAATGGCAGTGAGGAAGGACTAAAAATAAAACTGTCTTCAATTTTCCTTTCATAA 1710 0.4041 MKRVYKLHATLIKTGQHDNPHSLRSFFLSCVQSSCSLDTARYAASVLLRFPIPPDPFLYNTVIRHVAPHSPTLALSIFSHMHRNAVPFDHFTFPLILKHHNHHHHLHSLVFKLGFDSNIFVQNALLNAYGSRGSINFAVKLFDEMLYRDLVSWSTLIACFVNNNLHFEALSLFQQMQLRDPDIGNSSDGVIMLSVISAVSCLGVLELAIWVHSFIVRIGLPLTVPLGSSLINMYSRCGSIDRSVMVFDEMPHRNVVTWTALINGLAVHGCSREGLEAFYDMTESGLKPDRAAFIAALVACSHGGLVEDGWRVFRSMRDEFGIEPMLEHYGCMVDLLGRAGLLVEAFEFVEEMPLKPNSVIWRTLLGACVNHNHLVLAEKARKMVNELDPHHHGDYVLLSNAYGGVGDWGGKAGLRNSMRKNRIVKEPGLSFIHIDQGVHEFVSGDHSHPQWEEITKFLVSVIDTVKLGGYTPNTSSVLHDIQEEEKEHCVGYHKILLLEIEIGSITLARDHVLAEIFECSSRDIPVSHHQLVSSNWWLHNGIGNLEITGSSNNGSEEGLKIKLSSIFLS 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02579 569 Pfam E motif 371 432 IPR046848 -
Car05g02579 569 Gene3D Tetratricopeptide repeat domain 301 448 IPR011990 GO:0005515
Car05g02579 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Car05g02579 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Car05g02579 569 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
Car05g02579 569 TIGRFAM PPR: pentatricopeptide repeat domain 121 146 IPR002885 -
Car05g02579 569 TIGRFAM PPR: pentatricopeptide repeat domain 151 179 IPR002885 -
Car05g02579 569 Pfam PPR repeat 256 286 IPR002885 -
Car05g02579 569 Pfam PPR repeat 328 353 IPR002885 -
Car05g02579 569 Pfam PPR repeat 151 178 IPR002885 -
Car05g02579 569 Pfam PPR repeat 228 254 IPR002885 -
Car05g02579 569 Pfam PPR repeat 123 148 IPR002885 -
Car05g02579 569 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 38 495 - -
Car05g02579 569 Gene3D Tetratricopeptide repeat domain 182 300 IPR011990 GO:0005515
Car05g02579 569 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 495 - -
Car05g02579 569 Gene3D Tetratricopeptide repeat domain 68 181 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02579 Car-Chr5 70822985 70825662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02579 71 481 Glycoside Hydrolase AT3G49170 37.055 2.17e-87 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02579 - - gmx:100783911 744.191