Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3447 ATGGTTAATTTCCACTCTCAAACCATGCAAGTTTCTTCTTCATCACTTAACCCATGGTTCCCAACTCTCACTTCCAACCGCTTCCGCCGCATTCACTTACCGGAACCATCTTCCACCACCGCCACCGTATACTCACCACCTTCTCTCTCGTTTCTTTCATCTCAAAGAAACCGTTCTTCTTCTTCTTCTTTCACCTCACTCACATCAACAAAAACCAAAAGAAGAAGAAGAAGAACGTCCACGTTCACGTTCACCGTAACTTCAATATTCGAACGATTCACAGAAAGATCAATAAAATCTATAGTCTACGCCGAAAAAGAAGCGAAATTCTTCAAGAGCGATTTTCTTTACGCACAGCATATCATGCTTGGTCTCATAGCTGAAGCTGAAGAGTCAAATCGTTCTCAAAACGGTTTTCTTGATTCTGGTGTAGTCACTCTTGAGAAAGCTCGTGATGCTGTTCCTCATCTCAATGATTCAACTAACTACGTTGATGATAACGGTGTGTATGTCTATCAAGATCGACCCGTTCCGTTTTCTTTTGGTACTAAACGTGTTTTTGAAGCTGCTGTTGAGTATTCAAGATCTTTGAATCATAATTTTGTTGATCCTGAACATATTTTCGTTGCTTTGATGAAAGTTGATGATGGAAGTTCTGTTAGAATTCTTTATAGACTCGGGTCAAACCCAGATCAGTTGGCAGCTGCGGCATATTCCAGACTACAAAAAGAGCTGGCTAGAGATGGTAGAGAGCCAGGTTATGTGTCCAATGGGGGGCACAACAAATCTATACCACAAAGGCGTTCTGGTGCAGGATCTGCTGCTAAAACAAAAGATAAGAAAGATAAGAAGAATGCTCTATCACAATTCTGCGTGGATCTCACTGCCCGCGCAAGTGTTGGACTGATTGATCCAGTTATTGGCCGAGAAGTTGAAGTTCAAAGAATTATTCAAATACTATGCCGAAAGACAAAAAGCAATCCAATTCTTCTGGGTGAAGCTGGAGTTGGGAAAACAGCTATTGCGGAGGGACTGGCAATTCTTATTTCTCGCGCAGAAGTTGCTCCTTTTCTATTGACAAAACGTGTCATGTCCTTGGATGTAGGACTATTAATGGCTGGGGCAAAAGAGAGAGGAGAGCTAGAGGACCGCGTTACAAAATTAATAAAAGATATAATAGAGTCAGGTGATGTCATTCTTTTCATTGACGAAGTTCACACACTTGTTCAATCAGGGACAACCGGGAGGGGAAATAAGGGCTCTGGCTTTGACATTGCTAATTTGCTTAAACCTTCACTTGGAAGGGGTCAGTTTCAGTGTATTGCATCTACCACTATTGATGAATACAGGCTTCATTTTGAAAAGGATAAGGCTTTGGCACGGCGGTTTCAACCTGTTTGGATTGATGAGCCGAGTGAGGATGATGCAATTAAGATACTTATGGGCTTACGTGAGAAATATGAGGCACACCACAAGTGCAGATATACAGAAGATGCCATAAAGGCTGCAGTTCATTTGTCAGCAAGATACATAGTTGATAGGTATCTACCTGATAAAGCTATTGACCTCATTGATGAAGCAGGAAGTAAAGCTTCTATTGAATCCTTTAAGATGAAAAAAGAACACGATTATTGCATACTCTCTAAAAGCCCGGATGATTATTGGAGAGAAATTAGAACTGTTCAGTCCACGCTTAAAATGGTTCAGGAGAGCATGCTTAAATATTATGGTGCATCTGGCATTGAGGATACCAGTGAACTCATACTTGACTCATATTTAACTTCTGCAGCATTTGATAATGAGTGTATAGAAGTCAGGCCTGATCATATAGCAGCAGTTGCTTCCCTCTGGTCAGGAATTCCAGTTCAGCAGCTAACTGCTGATGAAAGAAGTCTTCTGTTAGATCTCGATAATAAACTAAGAGAACGTGTGATTGGACAAGAGGAGGCTGTTTCTGCCATTTCTAGATCTGTGAAGAGATCCCGAGTTGGCCTTCAGGATCCCGGTAGACCCATAGCAACTTTACTATTCTGTGGCCCAACTGGTGTTGGGAAAACTGAACTAGCAAAGTCTTTGGCTGCATGCTATTTTGGATCGGAAACGAACATGATAAGGTTAGACATGAGTGAATATATGGAACGCCATTCAGTGAGCAAGTTATTAGGATCTCCCCCAGGTTATGTTGGTTATGGAGAAGGGGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTTACTGTGGTTTTGTTTGATGAAATAGAAAAAGCTCATCCAGATATATTTAACATTCTTCTTCAATTAATGGAAGATGGCCATCTTACCGATTCTCAGGGTCGAAGAGTTTCATTTAAAAATGCATTGGTGGTGATGACTTCAAATGTGGGGTCTAGTGCCATTGCTAAGGGTCGACACAACTCCATGGGTTTCTTGATTTCAGATGACAAACCAACATCATATAGTGGATTGAAATCGATGGTAATTGAAGAACTGAGGACATATTTTCGTCCAGAACTGCTCAACAGGATAGATGAAGTGGTGGTGTTTCATCCCCTTGAAAAGCCACAGTTGCTCAAAATATTTGATTTACTGCTGCAAGACGTGAAAAGGACCATGCCCCGAGGAATTGATTTTGAGGTGTCTGAATCAGTCAAGGACCTTGTCTGTAAGGAAGGCTATGACCCAACATATGGTGCTAGACCTCTCAGGAAAGCCATTGTAAACTTAATTGCAAACCCATTGGCTGAAGCATTGCTTGCTGAAAAGTGCAAGGAAGGTGACACTGTCTTCATTGATTTGGATGCCAATGGTAACACCCTTGTTATAAATCAGCTTGATCAGACACAAGTCACCCTTGAGTAA 2859 0.4138 MVNFHSQTMQVSSSSLNPWFPTLTSNRFRRIHLPEPSSTTATVYSPPSLSFLSSQRNRSSSSSFTSLTSTKTKRRRRRTSTFTFTVTSIFERFTERSIKSIVYAEKEAKFFKSDFLYAQHIMLGLIAEAEESNRSQNGFLDSGVVTLEKARDAVPHLNDSTNYVDDNGVYVYQDRPVPFSFGTKRVFEAAVEYSRSLNHNFVDPEHIFVALMKVDDGSSVRILYRLGSNPDQLAAAAYSRLQKELARDGREPGYVSNGGHNKSIPQRRSGAGSAAKTKDKKDKKNALSQFCVDLTARASVGLIDPVIGREVEVQRIIQILCRKTKSNPILLGEAGVGKTAIAEGLAILISRAEVAPFLLTKRVMSLDVGLLMAGAKERGELEDRVTKLIKDIIESGDVILFIDEVHTLVQSGTTGRGNKGSGFDIANLLKPSLGRGQFQCIASTTIDEYRLHFEKDKALARRFQPVWIDEPSEDDAIKILMGLREKYEAHHKCRYTEDAIKAAVHLSARYIVDRYLPDKAIDLIDEAGSKASIESFKMKKEHDYCILSKSPDDYWREIRTVQSTLKMVQESMLKYYGASGIEDTSELILDSYLTSAAFDNECIEVRPDHIAAVASLWSGIPVQQLTADERSLLLDLDNKLRERVIGQEEAVSAISRSVKRSRVGLQDPGRPIATLLFCGPTGVGKTELAKSLAACYFGSETNMIRLDMSEYMERHSVSKLLGSPPGYVGYGEGGILTEAIRRKPFTVVLFDEIEKAHPDIFNILLQLMEDGHLTDSQGRRVSFKNALVVMTSNVGSSAIAKGRHNSMGFLISDDKPTSYSGLKSMVIEELRTYFRPELLNRIDEVVVFHPLEKPQLLKIFDLLLQDVKRTMPRGIDFEVSESVKDLVCKEGYDPTYGARPLRKAIVNLIANPLAEALLAEKCKEGDTVFIDLDANGNTLVINQLDQTQVTLE* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3447 952 Gene3D - 851 950 - -
Mtr3g3447 952 ProSitePatterns Chaperonins clpA/B signature 1. 424 436 IPR018368 GO:0005524
Mtr3g3447 952 MobiDBLite consensus disorder prediction 53 72 - -
Mtr3g3447 952 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 89 948 - -
Mtr3g3447 952 CDD AAA 645 793 - -
Mtr3g3447 952 SMART AAA_5 324 473 IPR003593 -
Mtr3g3447 952 SMART AAA_5 671 852 IPR003593 -
Mtr3g3447 952 MobiDBLite consensus disorder prediction 249 281 - -
Mtr3g3447 952 Pfam ATPase family associated with various cellular activities (AAA) 329 433 IPR003959 GO:0005524|GO:0016887
Mtr3g3447 952 Gene3D - 273 472 IPR027417 -
Mtr3g3447 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 933 IPR027417 -
Mtr3g3447 952 CDD AAA 307 464 - -
Mtr3g3447 952 Gene3D - 92 250 IPR036628 -
Mtr3g3447 952 SMART ClpB_D2_small_2 851 941 IPR019489 -
Mtr3g3447 952 ProSitePatterns Chaperonins clpA/B signature 2. 705 723 IPR028299 -
Mtr3g3447 952 Pfam C-terminal, D2-small domain, of ClpB protein 851 929 IPR019489 -
Mtr3g3447 952 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 675 693 IPR001270 GO:0005524
Mtr3g3447 952 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 720 738 IPR001270 GO:0005524
Mtr3g3447 952 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 749 767 IPR001270 GO:0005524
Mtr3g3447 952 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 782 796 IPR001270 GO:0005524
Mtr3g3447 952 ProSiteProfiles Clp repeat (R) domain profile. 90 244 IPR004176 -
Mtr3g3447 952 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 89 948 - -
Mtr3g3447 952 Pfam AAA lid domain 472 566 IPR041546 -
Mtr3g3447 952 Gene3D - 474 589 IPR027417 -
Mtr3g3447 952 Gene3D - 601 850 IPR027417 -
Mtr3g3447 952 Pfam Clp amino terminal domain, pathogenicity island component 190 236 IPR004176 -
Mtr3g3447 952 SUPERFAMILY Double Clp-N motif 91 239 IPR036628 -
Mtr3g3447 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 543 IPR027417 -
Mtr3g3447 952 Pfam AAA domain (Cdc48 subfamily) 670 845 IPR003959 GO:0005524|GO:0016887
Mtr3g3447 952 MobiDBLite consensus disorder prediction 53 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3447 Mtr-Chr3 48316584 48323547 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3447 - - gmx:100793074 1251.11