Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03112 ATGATTAGTTGCTGTGTCCTTCACCCGAAGATCAATACACCATCACCATCATCATGTTCATCCATGGCGGAACTCAAGCAGCACCACTCCCTTCTCATCCGCCTCGGCCTCTCCTCCGACAACCACGCCATCTCCCCACTTATCACCTTCTCCTCCCTCTCTCCATACGGCGATCTCCGCTACGCTGTCACCCTCTTTTCCACCCTCTCAAACCCTGACACCTTTCTCTTCAACACTCTTATCAGAGCCTTCTCCCTCTCCCAAACCCCCTCCACTTCCCTCCTCTTCTACTCTGACATGCTCCATCGCTCTCTCTCACCCAACAACTTCACCTTCCCCTCTCTCATCAAATCATCATCACTCTCCGCTACAATTCACCATGGCAGACAGGTCCATGCCCATGTTCTCAAGTTTGGGTTTGGGTCGGATGTTTATGCTCTCAATGCCTTAGCTCACATGTATGTTGGTTTTGGTTTGTTGGGTGATGCAAGGAAGGTGTTTGATAGAATGACTGTGAGGAGTGTTGTGTCTTGGACTATTATGATTTCTGGGTATTCTCAATGGGGGCTTGTGGACGAGGCTCTCGCTGTATTCGAGCTCTTGCCACAGAAGAATTCTGTTGCTTGGAATGCTGTCATTGCGGCTTTCGTAGGCAGCAATCGGTTTCGAGAGGCTTTTGGTTTGTTTCATAGGATGAGGAAGGAGCAGGAGGTGGAGCTGGATATGTATGTAGCTGCTACCATGCTTTCTGCTTGTACTGGAGTTGGTGCTTTGGAGATGGGAGAGTGGATACATCGGTATGTTGTGAGGAGTGGGATTGATTTGGACTCGAAGCTCGCTACGACCATTATTGACATGTATTGCAAGTGTGGTTGTCTGGACAAGGCTTTTGAGGTGTTCAGTGGGTTGCAGCTGAAAGGCCTTTCTTCATGGAACTGCATGATTGGAGGGTTTGCAATGCATGGAAAAGGAAAAGATGCTATTAGGCTTTTTAGGGAGATGGAGAAAGAGATGGTTTCCCCTGACAGTGTTACCTTTGTCAATGTCCTGAGTGCTTGTGCTCATTCAGGGTTAGTTGAGGAAGGCCGCTATTACTTTCGTTACATGACAGAAGTTCATGGCATTGAGCCTGCAAAGGAGCATTATGGCTGCATGGTTGATTTGCTTGCCAGGGCTGGAAGGCTGGAGGAAGCAAGAAAGGTCATAGATGAGATGCCAATGAACCCTGATGCTGGTGCATTAGGTGCACTTCTCGGAGCTTGTAAAATCCATGGAAACCTCGAGTTAGGAGAGGAAATAGGCAAGAGGGTGATTGAGCTAGAGCCTGGAAATAGTGGCCGTTATGTACTACTAGCTAACATATATGCTGATTGTGGTAAATGGCAAGAAGTTGCTAATGTGAGGAAAGTGATGAATGATAGAGGAGTGAAGAAGGTGCCTGGCTTTTCGATGATCGAAATGGAGGGTACTGTTAACGAATTTGTTGCAGGAGAAAGGACTCATCCTCTGGCTCAAGAAGTGTATGCCAAAGTTGGTGAGATATTGGAATCAATCAAGATGGTTGGTTATGTTCCGAAAAATGAAGGTGTGTTGCATGATCTTGCTGAGGAAGAAGAGGAGAGTCCCCTGTTCTATCATAGCGAAAAGCTTGCAATTGCTTATGGGTTGTTGAAAACTAAACCAGGAGAAACCTTGAGAATCACCAAGAATCTGAGGGTTTGTAAAGACTGCCACCAAGCATGTAAATTGATCTCAAAAGTTTATGAGTGTGATATAATTCTAAGGGACAGGAATCGTTTCCACCATTTTAGCAATGGGAGTTGTTCTTGTAATGACTACTGGTGA 1845 0.4634 MISCCVLHPKINTPSPSSCSSMAELKQHHSLLIRLGLSSDNHAISPLITFSSLSPYGDLRYAVTLFSTLSNPDTFLFNTLIRAFSLSQTPSTSLLFYSDMLHRSLSPNNFTFPSLIKSSSLSATIHHGRQVHAHVLKFGFGSDVYALNALAHMYVGFGLLGDARKVFDRMTVRSVVSWTIMISGYSQWGLVDEALAVFELLPQKNSVAWNAVIAAFVGSNRFREAFGLFHRMRKEQEVELDMYVAATMLSACTGVGALEMGEWIHRYVVRSGIDLDSKLATTIIDMYCKCGCLDKAFEVFSGLQLKGLSSWNCMIGGFAMHGKGKDAIRLFREMEKEMVSPDSVTFVNVLSACAHSGLVEEGRYYFRYMTEVHGIEPAKEHYGCMVDLLARAGRLEEARKVIDEMPMNPDAGALGALLGACKIHGNLELGEEIGKRVIELEPGNSGRYVLLANIYADCGKWQEVANVRKVMNDRGVKKVPGFSMIEMEGTVNEFVAGERTHPLAQEVYAKVGEILESIKMVGYVPKNEGVLHDLAEEEEESPLFYHSEKLAIAYGLLKTKPGETLRITKNLRVCKDCHQACKLISKVYECDIILRDRNRFHHFSNGSCSCNDYW 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03112 614 PANTHER OS06G0231400 PROTEIN 15 588 - -
Aip08g03112 614 Pfam PPR repeat family 309 354 IPR002885 -
Aip08g03112 614 Pfam PPR repeat family 204 252 IPR002885 -
Aip08g03112 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Aip08g03112 614 SUPERFAMILY TPR-like 197 464 IPR011990 GO:0005515
Aip08g03112 614 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 15 588 - -
Aip08g03112 614 Pfam PPR repeat 147 173 IPR002885 -
Aip08g03112 614 Pfam PPR repeat 381 406 IPR002885 -
Aip08g03112 614 Pfam PPR repeat 281 307 IPR002885 -
Aip08g03112 614 Pfam E motif 424 486 IPR046848 -
Aip08g03112 614 Gene3D Tetratricopeptide repeat domain 258 357 IPR011990 GO:0005515
Aip08g03112 614 Gene3D Tetratricopeptide repeat domain 123 257 IPR011990 GO:0005515
Aip08g03112 614 Gene3D Tetratricopeptide repeat domain 358 487 IPR011990 GO:0005515
Aip08g03112 614 Pfam DYW family of nucleic acid deaminases 522 614 IPR032867 GO:0008270
Aip08g03112 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Aip08g03112 614 TIGRFAM PPR: pentatricopeptide repeat domain 176 201 IPR002885 -
Aip08g03112 614 TIGRFAM PPR: pentatricopeptide repeat domain 281 308 IPR002885 -
Aip08g03112 614 TIGRFAM PPR: pentatricopeptide repeat domain 207 235 IPR002885 -
Aip08g03112 614 TIGRFAM PPR: pentatricopeptide repeat domain 310 342 IPR002885 -
Aip08g03112 614 TIGRFAM PPR: pentatricopeptide repeat domain 382 405 IPR002885 -
Aip08g03112 614 Gene3D Tetratricopeptide repeat domain 15 119 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03112 Aip-Chr8 121174713 121176639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03112 17 614 Glycoside Hydrolase AT3G49170 35.750 1.17e-121 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03112 - - lang:109362323 923.694