Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2140 ATGATTAGTTGCTGTGTCCTTCACCCGAAGATCAATACACCATCACCATCATCATCATCATGTTCATCCATGGCGGAACTCAAGCAGCACCACTCCCTTCTCATCCGCCTCGGCCTCTCCTCCGACAACCACGCCATCTCCCCACTTATCACCTTCTCCTCCCTCTCTCCATACGGCAATCTCCGCTACGCTGTCACCCTCTTTTCCACCCTCCCAAACCCTGACACCTTTCTCTTCAACACTCTTATCAGAGCCTTCTCCCTCTCCCAAACCCCCTCCACTTCCCTCCTCTTCTACTCTGACATGCTCCATCGCTCTCTCTCACCCAACAACTTCACCTTCCCCTCTCTCATCAAATCCTCATCACTCTCCGCTACAATTCACCATGGCAGACAGGTCCATGCCCATGTTCTCAAGTTTGGGTTTGGATCGGATGTTTATGCTCTCAATGCCTTAGCTCACATGTATGTTAGTTTTGGTTTGTTGGGTGATGCAAGGAAGGTGTTTGATAGAATGCCTGTGAGGAGTGTTGTGTCTTGGACTATTATGATTTCTGGGTATGCTCAATGGGGGCTTGTGGACGAGGCTCTCGCTGTATTCGAGCTCTTGCCACAGAAGAATTCTGTTGCTTGGAATGCTGTCATTGCGGCTTTCGTTGGCAGCAATCGGTTTCGAGAGGCTTTTGGTTTGTTTCATAGGATGAGGAAGGAGGAGGAGGTGGAGCTGGATATGTATGTAGCTGCTACCATGCTTTCTGCTTGTACTGGAGTTGGTGCTTTGGAGATGGGAGAGTGGATACATCGGTATGTTGTGAGGAGTGGGATTGATTTGGACTCGAAGCTCGCTACGACCATTATTGACATGTATTGCAAGTGTGGCTGTTTGGACAAGGCTTTCAAGGTGTTCGGTGGGTTGCAGGTGAAAGGCCTTTCTTCATGGAACTGCATGATTGGAGGGTTTGCAATGCATGGAAAAGGAAAAGATGCTATTAGGCTTTTTAGGGAGATGGAGAAAGAGATGGTTTCCCCTGACAGTGTTACCTTTGTCAATGTCCTGAGTGCTTGTGCTCATTCAGGGTTAGTTGAGGAAGGCCGCTATTACTTTCGTTACATGACAGAAGTTCATGGCATTGAGCCTGCAAAGGAGCATTATGGCTGCATGGTTGATTTGCTTGCCAGGGCTGGAAGGCTGGAGGAAGCAAGAAAGGTCATAGATGAGATGCCAATGAACCCTGATGCCGGTGCGTTAGGTGCACTTCTCGGAGCTTGTAAAATCCATGGAAACCTCGAGTTAGGAGAGGAAATAGGCAAGAGGGTGATTGAGCTAGAGCCTGGAAATAGTGGCCGTTATGTACTACTAGCTAACATATATGCTGATTGTGGTAAATGGCAAGAAGTTGCTAATGTGAGGAAAGTGATGAATGATAGAGGAGTGAAGAAGGTGCCTGGCTTTTCGATGATCGAAATGGAGGGTACTGTTAACGAATTTGTTGCAGGAGAAAGGACTCATCCTCTGGCTCAAGAAGTGTATGCCAAAGTTGGTGAGATATTGGAATCAATCAAGATGGTTGGTTATGTTCCGGAAAATGAAGGTGTGTTGCATGATCTTGCTGAGGAAGAAGGGGAGAGTCCCCTGTTCTATCATAGCGAAAAGCTTGCAATTGCTTATGGGTTGTTAAAAAATAAACCAGGAGAAACCTTGAGAATCACAAAGAATCTGAGGGTTTGTAAAGACTGCCACCAAGCATGTAAATTGATCTCAAAAGTTTATGAGTGTGATATAATTCTAAGGGACAGGAATCGTTTCCACCATTTTAGCAATGGGAGTTGTTCTTGTAATGACTACTGGTGA 1851 0.4646 MISCCVLHPKINTPSPSSSSCSSMAELKQHHSLLIRLGLSSDNHAISPLITFSSLSPYGNLRYAVTLFSTLPNPDTFLFNTLIRAFSLSQTPSTSLLFYSDMLHRSLSPNNFTFPSLIKSSSLSATIHHGRQVHAHVLKFGFGSDVYALNALAHMYVSFGLLGDARKVFDRMPVRSVVSWTIMISGYAQWGLVDEALAVFELLPQKNSVAWNAVIAAFVGSNRFREAFGLFHRMRKEEEVELDMYVAATMLSACTGVGALEMGEWIHRYVVRSGIDLDSKLATTIIDMYCKCGCLDKAFKVFGGLQVKGLSSWNCMIGGFAMHGKGKDAIRLFREMEKEMVSPDSVTFVNVLSACAHSGLVEEGRYYFRYMTEVHGIEPAKEHYGCMVDLLARAGRLEEARKVIDEMPMNPDAGALGALLGACKIHGNLELGEEIGKRVIELEPGNSGRYVLLANIYADCGKWQEVANVRKVMNDRGVKKVPGFSMIEMEGTVNEFVAGERTHPLAQEVYAKVGEILESIKMVGYVPENEGVLHDLAEEEGESPLFYHSEKLAIAYGLLKNKPGETLRITKNLRVCKDCHQACKLISKVYECDIILRDRNRFHHFSNGSCSCNDYW* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2140 616 TIGRFAM PPR: pentatricopeptide repeat domain 384 407 IPR002885 -
Amo08g2140 616 TIGRFAM PPR: pentatricopeptide repeat domain 209 237 IPR002885 -
Amo08g2140 616 TIGRFAM PPR: pentatricopeptide repeat domain 283 310 IPR002885 -
Amo08g2140 616 TIGRFAM PPR: pentatricopeptide repeat domain 312 344 IPR002885 -
Amo08g2140 616 TIGRFAM PPR: pentatricopeptide repeat domain 178 203 IPR002885 -
Amo08g2140 616 PANTHER OS06G0231400 PROTEIN 17 590 - -
Amo08g2140 616 Pfam DYW family of nucleic acid deaminases 524 616 IPR032867 GO:0008270
Amo08g2140 616 SUPERFAMILY TPR-like 152 466 IPR011990 GO:0005515
Amo08g2140 616 Pfam PPR repeat 149 175 IPR002885 -
Amo08g2140 616 Pfam PPR repeat 383 408 IPR002885 -
Amo08g2140 616 Pfam PPR repeat 283 309 IPR002885 -
Amo08g2140 616 Gene3D Tetratricopeptide repeat domain 126 257 IPR011990 GO:0005515
Amo08g2140 616 Pfam PPR repeat family 206 254 IPR002885 -
Amo08g2140 616 Pfam PPR repeat family 311 356 IPR002885 -
Amo08g2140 616 Gene3D Tetratricopeptide repeat domain 17 120 IPR011990 GO:0005515
Amo08g2140 616 Gene3D Tetratricopeptide repeat domain 333 481 IPR011990 GO:0005515
Amo08g2140 616 Pfam E motif 426 488 IPR046848 -
Amo08g2140 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Amo08g2140 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Amo08g2140 616 Gene3D Tetratricopeptide repeat domain 265 332 IPR011990 GO:0005515
Amo08g2140 616 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2140 Amo-Chr8 34280421 34282271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2140 92 616 Glycoside Hydrolase AT3G49170 36.093 6.31e-123 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2140 - - lang:109362323 924.85