Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1645 ATGCAAGTTTCCTCCTCCTGGTTCGGTACCTTACCTTGTTCACTTCCTCTGGAATCCTGTTCCACCTCAACCACATGCCTTTCCGCTTCCTCCTACACCTATTCTCCTCGTACTAACGTCTTTTTCACGCGCTCTCATCCACGACCCTTCACTGCTCTCTCGTTTCTGGTCTCTCAAAGAAAAGGCTTCACGCAGTTGGCACCGATCAGAAGGTCCAAGAAGAGAAGAAGAGCGTTGGGTGTTTCCGCTGTGTTCGAACGCTTCACGGAAAGAGCAATAAAAGCCATAGTCTTGTCGCAGAGGGAAGCCAAAGGGCTCGGAAGCGAATTGGTTTACACGCAACATCTCTTGCTGGGACTTGTGGCAGAGGAGGATCGCTCCTCCGACGGTTTTCTCGCGTCTGGTATCCCGGTCGAGAAGGCACGTGAGGTTGTTCGCAATATCTGGCATCGGAACAGTTCTGCACGTGGTGGGGTCAATGATGATCACAAAACAAGTGCCACGCAGGTTCCCTTTTCCGTTAATGCGAAGCGAGTGTTTGAGGCTGCGGTGGAGTATTCGAAGTCTCTGGGACACAAATTCGTTGCCCCGGAACACATTACTGTGGGTTTAGTCAAAGTGGATGATGGAAGTGTTAGTAGGATTCTTTACAGATTGGGGACAAATGGAAATCAATTGGCAGCTGTGGCATTCTCCAGATTACAAAAGGAGATTGCTAAAGACGGTAGAGAACCTAACACAGTGTCCAAGGGGATTCCTAACAAATCGCTTTCTAGAAAAGGTTCTGAAGCTGGAGCCTCTGGCACAACAGGAGAGGAGAGTCCTTTATCACAATTTTGTGTGGATCTCACTGCCCGTGCAAGTGAAGGACAAATTGATCCAGTTGTTGGCCGAGAAGTTGAAGTTCAGAGAATAATTCAAATACTATGCAGGAAAACAAAAAGTAATCCCATTCTTCTTGGTGAAGCTGGAGTTGGAAAAACTGCTATTGCCGAGGGGTTGGCACTTCGTATTGCTAAGGCAGATGTTTCTCCCTTTTTATTGACAAAGCGTGTGATGTCCTTGGATATAGCCCTCTTAATGGCTGGAGCAAAAGAAAGAGGAGAGCTAGAGGAACGTGTTACAAAGTTGATAAAAGAAGTGATCAAGTCAGGTGATGTCATTCTCTTCATTGACGAAGTTCATATACTTGTTCAGGCAGGAACAGTTGGGAGAGGAAATAAGGGATCTGGCCTTGACATTGCTAATTTACTTAAACCTGCACTTGGAAGAGGTCAATTTCAGTGTATTGCATCAACCACCATAGATGAATACAGACTTTACTTTGAAAAAGACACAGCGTTGGCTCGACGGTTTCAACCTGTTTGGGTTGATGAGCCGAGTGAGGATGACGCGATTAAGATCCTTACGGGCATACGTGAGAAATATGAGGCATATCATAAATGCAGATACACAACAGATGCTATAAAGGCTGCAGTTGATTTGTCAGCAAGATACATAGTTGATAGGTATCTACCTGATAAAGCTATTGACCTCATAGATGAAGCAGGAAGCAGAGCTCGTATTGTAGCCTTTAAGAAGAAAAAGGAACAAGAAACTGGCATTCTTTCTAAGTGCCCAGCTGATTACTGGCAAGAAATTAGAGCGGTCAAGTCCATGCATGAAATGGAGAGCAAGCTTAAATACTATGGTGCTTCCAACATTGACGAAAACAATGAACTCATACTGGATTCATATTTATCTTCTACAACCATTGATGATGAACCAATAGTAGTGGGGCCAGAAGATATAGCAGCAGTTGCTTCCCTCTGGTCAGGAATTCCTGTGCAGAAGCTCACGGTTGATCAAAGAATTCTTCTGTTAGACCTTGATAATCAACTTCGCAAACGTGTGATTGGACAAGAGGAGGCTGTTGCTGCCATTTCTAGAGCTGTGAAGAGATCTCGGGTTGGCCTCAAGGATCCTGATAGACCAATAGCTACCTTGTTATTCTGTGGTCCTACCGGAGTTGGGAAAACAGAACTTGCAAAATCTTTGGCTGCATGTTACTTTGGATCGGAGGCAGCCATGGTACGACTAGACATGAGTGAATACATGGAACGGCATACAGTGAGCAAATTGATCGGATCACCCCCAGGTTATGTTGGTTATGGAGAGGGCGGCGTTTTAACTGAAGCTATTAGAAGAAAACCGTTTACTGTGTTATTGCTTGATGAAATAGAGAAAGCTCATCCAGATATATTCAACATTCTTCTTCAAATTTTGGAAGATGGTCAACTTACTGATTCTCAGGGTCGCAGAGTTTCATTTAAAAATGCACTGGTGGTAATGACTTCAAATGTGGGGTCTAGTGCAATTGCTAAGGGTCAACACAACTCCATAGGTTTCTTGATTCCTGATGATAAAACAACATCATACAATGGCTTGAAATCGATGGTAATTGAAGAACTAAGGACATATTTTCGTCCAGAATTGCTCAACAGGATAGATGAAGTGGTAGTGTTTCAACCCCTCGAGAAGTCACAGTTACTGAAGATATTGGATTTGCTTCTTCAAGACATGAAGAAAAGGGTGTTGTCCCTAGGAATCAATGTTAAGGTGTCTGAAGCAATGAAGAACCTTGTGTGCCAGCAAGGCTATAACCCAACATATGGTGCTAGGCCTCTGAGAAGGGCCATTACATCACTAATAGAAGATCCATTGAGTGAGGCATTTCTTTTTGGAGAATGCAAGCCAGGTGACACTGTCCTCATCGATTTGGATGCTAATGGTTACCCCTTTATTACAAATCAGTTTGATAAGATTGTCAACTTATCTGACTGA 2823 0.4389 MQVSSSWFGTLPCSLPLESCSTSTTCLSASSYTYSPRTNVFFTRSHPRPFTALSFLVSQRKGFTQLAPIRRSKKRRRALGVSAVFERFTERAIKAIVLSQREAKGLGSELVYTQHLLLGLVAEEDRSSDGFLASGIPVEKAREVVRNIWHRNSSARGGVNDDHKTSATQVPFSVNAKRVFEAAVEYSKSLGHKFVAPEHITVGLVKVDDGSVSRILYRLGTNGNQLAAVAFSRLQKEIAKDGREPNTVSKGIPNKSLSRKGSEAGASGTTGEESPLSQFCVDLTARASEGQIDPVVGREVEVQRIIQILCRKTKSNPILLGEAGVGKTAIAEGLALRIAKADVSPFLLTKRVMSLDIALLMAGAKERGELEERVTKLIKEVIKSGDVILFIDEVHILVQAGTVGRGNKGSGLDIANLLKPALGRGQFQCIASTTIDEYRLYFEKDTALARRFQPVWVDEPSEDDAIKILTGIREKYEAYHKCRYTTDAIKAAVDLSARYIVDRYLPDKAIDLIDEAGSRARIVAFKKKKEQETGILSKCPADYWQEIRAVKSMHEMESKLKYYGASNIDENNELILDSYLSSTTIDDEPIVVGPEDIAAVASLWSGIPVQKLTVDQRILLLDLDNQLRKRVIGQEEAVAAISRAVKRSRVGLKDPDRPIATLLFCGPTGVGKTELAKSLAACYFGSEAAMVRLDMSEYMERHTVSKLIGSPPGYVGYGEGGVLTEAIRRKPFTVLLLDEIEKAHPDIFNILLQILEDGQLTDSQGRRVSFKNALVVMTSNVGSSAIAKGQHNSIGFLIPDDKTTSYNGLKSMVIEELRTYFRPELLNRIDEVVVFQPLEKSQLLKILDLLLQDMKKRVLSLGINVKVSEAMKNLVCQQGYNPTYGARPLRRAITSLIEDPLSEAFLFGECKPGDTVLIDLDANGYPFITNQFDKIVNLSD* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1645 940 Pfam Clp amino terminal domain, pathogenicity island component 100 147 IPR004176 -
Pvu9g1645 940 Pfam Clp amino terminal domain, pathogenicity island component 183 227 IPR004176 -
Pvu9g1645 940 CDD AAA 632 780 - -
Pvu9g1645 940 Pfam AAA domain (Cdc48 subfamily) 657 832 IPR003959 GO:0005524|GO:0016887
Pvu9g1645 940 PANTHER CHAPERONE PROTEIN CLPD1, CHLOROPLASTIC 65 940 - -
Pvu9g1645 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 532 IPR027417 -
Pvu9g1645 940 MobiDBLite consensus disorder prediction 249 274 - -
Pvu9g1645 940 ProSitePatterns Chaperonins clpA/B signature 2. 692 710 IPR028299 -
Pvu9g1645 940 Pfam AAA lid domain 461 555 IPR041546 -
Pvu9g1645 940 Pfam ATPase family associated with various cellular activities (AAA) 318 425 IPR003959 GO:0005524|GO:0016887
Pvu9g1645 940 ProSitePatterns Chaperonins clpA/B signature 1. 413 425 IPR018368 GO:0005524
Pvu9g1645 940 Gene3D - 838 934 - -
Pvu9g1645 940 CDD AAA 296 453 - -
Pvu9g1645 940 Pfam C-terminal, D2-small domain, of ClpB protein 838 917 IPR019489 -
Pvu9g1645 940 Gene3D UVR domain 527 588 - -
Pvu9g1645 940 Gene3D - 266 461 IPR027417 -
Pvu9g1645 940 SMART AAA_5 313 462 IPR003593 -
Pvu9g1645 940 SMART AAA_5 658 839 IPR003593 -
Pvu9g1645 940 Gene3D - 87 244 IPR036628 -
Pvu9g1645 940 SUPERFAMILY Double Clp-N motif 86 230 IPR036628 -
Pvu9g1645 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 922 IPR027417 -
Pvu9g1645 940 ProSiteProfiles Clp repeat (R) domain profile. 85 237 IPR004176 -
Pvu9g1645 940 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 65 940 - -
Pvu9g1645 940 SMART ClpB_D2_small_2 838 927 IPR019489 -
Pvu9g1645 940 Gene3D - 463 604 - -
Pvu9g1645 940 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 662 680 IPR001270 GO:0005524
Pvu9g1645 940 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 707 725 IPR001270 GO:0005524
Pvu9g1645 940 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 736 754 IPR001270 GO:0005524
Pvu9g1645 940 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 769 783 IPR001270 GO:0005524
Pvu9g1645 940 MobiDBLite consensus disorder prediction 242 274 - -
Pvu9g1645 940 Gene3D - 612 836 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1645 Pvu-Chr9 23102730 23109132 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1645 - - gmx:100793074 1569.29