Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1336 ATGATAAGAGTGTACAAGCTACACGCTGCGCTCATAAAAAACGGGCAACACAATAACCCACTCTCTCTCTGCTCCTTCTTCCTTACCTGCGCAAACTCCCTCGACACCGCACGCTATGCCGCATCTCTCTTGCTCCGTTTTCCCATCCCACCCGACCCATTTTCCTACAACACAATCATCAAACAAGTCGCACCCCATTCTCCCACCCTCGCCCTTTCCCTATTTTCCCATATGCACCGTAACTCAGTCCCTTTCGACCACTTCACTTTCCCACTCATCCTCAAACACCACCACCCCCATCACCTTCACTCTCTCATTCTCAAGCTCGGTTTCGACTCCAACATCTTCGTTCAGAACGCGCTTATTAATGCTTATGGTTCTTGTGGGTTACTCCATTTTGCAGTCAAACTGTTCGACGAAATGCTTCAGAGAGATTTAGTTTCTTGGTCTACTTTAATCGCTTGTTTCGTTAATAACAACCTTCCCGTTGAAGCCGTTTCTCTTTTCCAACAAATGCAGCTTGATCACCCTGACATTGTGAGTTCCATTGATGGGGTTATCATGCTGAGTGTTTTATCTGCGGTTTCGAGCTTAGGTGTGCTTGAATTAGGTGTCTGGGTTCATTCTTTTATTTCAAGGATAGGGCTTTTCGTTACTGTTCCATTGGGTACTGCTCTTATTAATATGTATTCTAGATGTGGGTCCATTGATCGTTCTGTTAAGGTGTTTGATGAAATGCCTCATAGAAATGTGGTTACCTGGACTGCATTGATTAATGGGCTTGCTGTTCATGGACGGAGTAGGGAAGCTTTGAAAGTGTTTGATGACATGAAGGAGTCTGGTTTGAAGCCTGATCGGGCTTCATTTATAGGTGTGTTGGTGGCTTGTAGTCATGGTGGTCTTGTGGAGGATGGTTGGCGGGTTTTTGAAAGCATGACGAATGAGTTTGGATTTGAACCGATGCTTGAGCATTATGGTTGTATGGTTGACCTTCTTGGTCGTGCAGGGCTTCTTGTTGAAGCTTTTGAGTTTGTGGAGAAAATGCCTGTGAAACCAAACTCTGTTATTTGGAGGACTTTGCTTGGGGCGTGTGTGAATCATAATCATCTTTTGTTGGCTGAAAAGGCCAGGGAAAGAGTCAAAGAGCTTGACCCACATCATGATGGTGATTATGTGCTTTTATCAAATGCATATGGTGGAGTTGGTAACTGGGGTGGTAAGGCTGGCTTGAGAAATTCTATGAGGCAAAATAGAATTGTCAAGGAGCCTGGCCTTAGTTTTATCCATATTGATCAAGTGGTTCATGAGTTTGTCTCTGGTGATCATTCTCATCCACAATGGGAGGAGATTACAAATTTTTTAGTTTCAATTATAGATACTTTAAAACTTGGAGGTTACATCCCTAATACTTCGTCTGTGTTACATGATATTCAAGAGGAAGAGAAAGAGCATTGTGTGGGTTATCATAGTGAGAAATTGGCAGTGGCTTTTGTGCTTCTTTATCATAGGGATAGAAGGACCATTAGGGTCATTAAGAATCTTAGGATTTGTAATGACTGTCATGACTTCATGAAGCATGTTTCGGGTATCTTTGACAGAGATATTATTATTAGAGATCGAAATCGATTTCATCACTTTAGCGAGGGATCGTGTTCTTGTCAAGATTTTTGGTAG 1674 0.4271 MIRVYKLHAALIKNGQHNNPLSLCSFFLTCANSLDTARYAASLLLRFPIPPDPFSYNTIIKQVAPHSPTLALSLFSHMHRNSVPFDHFTFPLILKHHHPHHLHSLILKLGFDSNIFVQNALINAYGSCGLLHFAVKLFDEMLQRDLVSWSTLIACFVNNNLPVEAVSLFQQMQLDHPDIVSSIDGVIMLSVLSAVSSLGVLELGVWVHSFISRIGLFVTVPLGTALINMYSRCGSIDRSVKVFDEMPHRNVVTWTALINGLAVHGRSREALKVFDDMKESGLKPDRASFIGVLVACSHGGLVEDGWRVFESMTNEFGFEPMLEHYGCMVDLLGRAGLLVEAFEFVEKMPVKPNSVIWRTLLGACVNHNHLLLAEKARERVKELDPHHDGDYVLLSNAYGGVGNWGGKAGLRNSMRQNRIVKEPGLSFIHIDQVVHEFVSGDHSHPQWEEITNFLVSIIDTLKLGGYIPNTSSVLHDIQEEEKEHCVGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICNDCHDFMKHVSGIFDRDIIIRDRNRFHHFSEGSCSCQDFW* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1336 557 Pfam E motif 367 428 IPR046848 -
Psa5g1336 557 Pfam DYW family of nucleic acid deaminases 465 557 IPR032867 GO:0008270
Psa5g1336 557 Gene3D Tetratricopeptide repeat domain 300 426 IPR011990 GO:0005515
Psa5g1336 557 TIGRFAM PPR: pentatricopeptide repeat domain 224 251 IPR002885 -
Psa5g1336 557 TIGRFAM PPR: pentatricopeptide repeat domain 117 147 IPR002885 -
Psa5g1336 557 TIGRFAM PPR: pentatricopeptide repeat domain 252 285 IPR002885 -
Psa5g1336 557 TIGRFAM PPR: pentatricopeptide repeat domain 147 173 IPR002885 -
Psa5g1336 557 Pfam PPR repeat family 249 296 IPR002885 -
Psa5g1336 557 Pfam PPR repeat 324 349 IPR002885 -
Psa5g1336 557 Pfam PPR repeat 147 173 IPR002885 -
Psa5g1336 557 Pfam PPR repeat 119 145 IPR002885 -
Psa5g1336 557 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 35 521 - -
Psa5g1336 557 Gene3D Tetratricopeptide repeat domain 65 180 IPR011990 GO:0005515
Psa5g1336 557 Gene3D Tetratricopeptide repeat domain 181 299 IPR011990 GO:0005515
Psa5g1336 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Psa5g1336 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Psa5g1336 557 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1336 Psa-Chr5 104524224 104526763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1336 68 557 Glycoside Hydrolase AT3G49170 38.845 7.69e-119 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1336 - - gmx:100783911 859.366