Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2318 ATGCAGGTTTCATCCTCACCGGTTAGCTCACCGTGGTTCCGAGTCAGCTTCGGTTCGAAAAGCCGTTACAACCAACGTTTCCAATCGGAGTCATGCTCAACTTCTTCAACCGCCACTGTAACTGCCTCCTATTACAACTCTCCATGTATTAACGTCCTCTTCTCACGCGCCGCTCCAGYGCGTTGCAGAATCAACACCACCTCCACGGSTACCGCCACCGCYGCAACCTCGCTCTCGTTTTTGGTTAATCAGAGAAACGCCTTCACCGCGGTGGTGCGTTCGCCGATCGCAATCGGCGGCGGCGGCGGTGGCAGGAAGGTAATTAAGAAGCGAAGAGTCTTCACCGTTTCCGCGGTTTTCGAGCGGTTCACGGAACGAGCAATAAAAGCGATAATGTTTTCGCAAAAGGAAGCGAAATCGCTGGGAAGTGACTTGGTTTACACGCAGCAYCTTCTGTTAGGGCTCATCGCTGAAGAGGATCGTTCAACCGACGGGTTTCTTGCGTCTGGTATAACGGTTGAGAAGGCACGTGATGCCGTCCGAAGTATATGGCAGAGGATTGGTTCCRCACGTGAYGACGCACGTGATGCTGGCGAGAAAGGTGGTTCGGCGAGTCACGTGCCTTTTTCTATTAGCGCAAAGCGTGTTTTTGAGGCGGCTGTTGAATATTCAAGGTCTCTTGGGCATAAGTTTGTTGCTCCTGAACATATAGCAGTTGCTTTGGTTAAAGTTGATGATGGAAGTGCTAGTCGAGTCCTTTATAGATTGGGGGCAAATGGAGGCCAGTTGGCAGCTGTGGCATTTTCCAGATTGCAAAAGGAGATTGCTAAAGATGGTAGGGAGCCAAATGCGGATTCCAAGGGATTGCATGACAAATCCATGGCAAGAAAACGTTATGATGCAGGGTCCTCTGCCGCCACCACCAAAGAACCGGATGCCATCTCACAATTTTGTGCCGATCTCACTGCTCGTGCGAGTGAAGGACTAATCGATCCTGTTATTGGCCGAGATACCGAGGTGCAGAGAATTGTTCAAATACTGTGCCGGAAAACAAAATGYAATCCCATTCTTCTTGGTGAACCTGGTGTTGGAAAAACAGCTCTTGCCGAAGGGTTGGCAATTCGCATTGCTAAGGCAGATGTTTCCCCATTTTTATTGACAAAACGTGTCATGTCTTTGGATGTTGCATTGTTAATGGCTGGGGCAAAAGAGAGAGGAGAGTTAGAGGAGCGTGTTACAAATTTAATAAAAGAGATAATAAGTKCAGGTGACATCATTCTTTTCATTGATGAAGTTCATACACTTGTTCAGTCCGGGACAAGTGGAAAAGGAAATAAGGGATCTGGCCTTGACATTTCCAATTTGCTTAAACCTGCACTTKCAAGGGGTCAACTTCAGTGTATTGCATCTACCACCGTCGACGAATACAGGCTTCATTTTGAGAAAGACAAGGCATTGGCACGAAGATTTCAACCTGTTTGGGTTGATGAGCCAATTGAGGATGATGCAGTTAAGATACTTATGGGTCTACGTGAGAAGTACGAGTCACACCACAAATGCATATATACCGAAGACGCCATAAAGGCTGCAGTTCAGTTGTCAGCGAGGTACATAGTCGATAGGTATCTACCAGATAAAGCTATTGACCTCATTGATGAAGCAGGAAGTAGAGCTCATATTGAAGCCTTTAAGAAGAGAAAGGAACAAGAAACTTGTGTACTTTCTAAGGACCCTGCTGATTACTGGCAAGAAATTAAAGATGTCCAGTCAATGCATGAAATGGAAAGCAAGCTTAAATACTACGGCGCCTCAAGCATTGACGATTCTAATGAACTCATACTGGACTCATATTTAGCTTCTGAAGCCAATGAAAATGAACCTGTTATAGTTGGACCAGAAGAAGTAGCCTTAGTTGCTTCCCTCTGGTCGGGAATTCCTGTTCAGCAGCTCACTGCTGACCAAAGAACTCTTCTGTTAGATCTTGAGAATCAGCTTCGGAAACGTGTTATTGGACAAGAGGAGGCTGTTACTGCCATTTCTAAAGCTGTGAAGAGATCCAGGGTTGGCCTTAAGGATCCTGATAGACCTATAGCTGCAATGTTATTTTGTGGCCCAACTGGGGTTGGAAAAACAGAACTCGCAAAATCTTTGGCAGCATGCTACTTTGGATCGGAGGCAGCCATGATTCGGCTAGACATGAGTGAATATATGGAGCGGCATACTGTGAGCAAATTGATAGGATCGCCACCAGGTTATGTTGGTTATGGAGAAGGAGGCATCTTAACTGAAGCTATTAGAAGAAAACCATTCACACTGGTACTACTTGATGAGATAGAGAAAGCTCATCCAGATATATTCAACATTCTTCTTCAGTTGTTAGAAGATGGCCAACTTACTGATTCTCAGGGTCGGCGAGTTTCATTTAAAAATGCATTGGTGGTGATGACTTCAAATATAGGGTCTAGTGCCATTTCTAAGGGTCGGCACAACTCCATAGGTTTCTTGATTCAAGATGACAAGAARGCATCATATAGTGGCTTGAAATCGATGGTAATGGAAGAATTGAGAAATTATTTTCGTCCGGAACTGCTCAACAGGATAGATGAAGTGGTAGTGTTTCAGCCCCTTGAAAAGTCACAGTTGCTGGAGATATTGAATCTGCTGCTGCAAGACATAAAGAAAAGGGTAATGCTTCTAGGAATAGATTTGAAGGTTTCTGAAGCAGTGAAGGACCTTGTTTGCCAGGAAGGTTATAATCCAACATATGGTGCCAGGCCTTTGAAGAGGGCCATTACATCAATAATTGAAGACCCTTTGAGTGAAGCATTCCTTGTAGGACAGTTCAAGCAAGGTGACACTGTCCTTATTGACTTGGATGCAAATGGTAAACCCTTTGTTACAAATCAACTTGACAAAATTATTAACATATCTGACGCAAGTCATCCCTGA 2949 0.4479 MQVSSSPVSSPWFRVSFGSKSRYNQRFQSESCSTSSTATVTASYYNSPCINVLFSRAAPXRCRINTTSTXTATAATSLSFLVNQRNAFTAVVRSPIAIGGGGGGRKVIKKRRVFTVSAVFERFTERAIKAIMFSQKEAKSLGSDLVYTQHLLLGLIAEEDRSTDGFLASGITVEKARDAVRSIWQRIGSXRDDARDAGEKGGSASHVPFSISAKRVFEAAVEYSRSLGHKFVAPEHIAVALVKVDDGSASRVLYRLGANGGQLAAVAFSRLQKEIAKDGREPNADSKGLHDKSMARKRYDAGSSAATTKEPDAISQFCADLTARASEGLIDPVIGRDTEVQRIVQILCRKTKCNPILLGEPGVGKTALAEGLAIRIAKADVSPFLLTKRVMSLDVALLMAGAKERGELEERVTNLIKEIISXGDIILFIDEVHTLVQSGTSGKGNKGSGLDISNLLKPALXRGQLQCIASTTVDEYRLHFEKDKALARRFQPVWVDEPIEDDAVKILMGLREKYESHHKCIYTEDAIKAAVQLSARYIVDRYLPDKAIDLIDEAGSRAHIEAFKKRKEQETCVLSKDPADYWQEIKDVQSMHEMESKLKYYGASSIDDSNELILDSYLASEANENEPVIVGPEEVALVASLWSGIPVQQLTADQRTLLLDLENQLRKRVIGQEEAVTAISKAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELAKSLAACYFGSEAAMIRLDMSEYMERHTVSKLIGSPPGYVGYGEGGILTEAIRRKPFTLVLLDEIEKAHPDIFNILLQLLEDGQLTDSQGRRVSFKNALVVMTSNIGSSAISKGRHNSIGFLIQDDKKASYSGLKSMVMEELRNYFRPELLNRIDEVVVFQPLEKSQLLEILNLLLQDIKKRVMLLGIDLKVSEAVKDLVCQEGYNPTYGARPLKRAITSIIEDPLSEAFLVGQFKQGDTVLIDLDANGKPFVTNQLDKIINISDASHP* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2318 982 MobiDBLite consensus disorder prediction 277 305 - -
Amo08g2318 982 Pfam AAA domain (Cdc48 subfamily) 695 870 IPR003959 GO:0005524|GO:0016887
Amo08g2318 982 Pfam Clp amino terminal domain, pathogenicity island component 220 264 IPR004176 -
Amo08g2318 982 Pfam Clp amino terminal domain, pathogenicity island component 135 183 IPR004176 -
Amo08g2318 982 SMART AAA_5 696 877 IPR003593 -
Amo08g2318 982 SMART AAA_5 351 500 IPR003593 -
Amo08g2318 982 CDD AAA 334 491 - -
Amo08g2318 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 570 IPR027417 -
Amo08g2318 982 CDD AAA 670 818 - -
Amo08g2318 982 Gene3D - 628 875 IPR027417 -
Amo08g2318 982 Gene3D - 876 973 - -
Amo08g2318 982 Pfam AAA lid domain 500 592 IPR041546 -
Amo08g2318 982 SUPERFAMILY Double Clp-N motif 121 263 IPR036628 -
Amo08g2318 982 PANTHER CHAPERONE PROTEIN CLPD1, CHLOROPLASTIC 102 979 - -
Amo08g2318 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 645 961 IPR027417 -
Amo08g2318 982 Gene3D - 116 275 IPR036628 -
Amo08g2318 982 ProSitePatterns Chaperonins clpA/B signature 1. 451 463 IPR018368 GO:0005524
Amo08g2318 982 MobiDBLite consensus disorder prediction 277 298 - -
Amo08g2318 982 Gene3D - 501 592 - -
Amo08g2318 982 Pfam C-terminal, D2-small domain, of ClpB protein 876 955 IPR019489 -
Amo08g2318 982 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 745 763 IPR001270 GO:0005524
Amo08g2318 982 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 700 718 IPR001270 GO:0005524
Amo08g2318 982 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 774 792 IPR001270 GO:0005524
Amo08g2318 982 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 807 821 IPR001270 GO:0005524
Amo08g2318 982 Pfam ATPase family associated with various cellular activities (AAA) 356 465 IPR003959 GO:0005524|GO:0016887
Amo08g2318 982 ProSiteProfiles Clp repeat (R) domain profile. 120 274 IPR004176 -
Amo08g2318 982 Gene3D - 302 499 IPR027417 -
Amo08g2318 982 ProSitePatterns Chaperonins clpA/B signature 2. 730 748 IPR028299 -
Amo08g2318 982 SMART ClpB_D2_small_2 876 966 IPR019489 -
Amo08g2318 982 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 102 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2318 Amo-Chr8 36560086 36566078 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2318 - - aip:107613298 1832.77