Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01918 ATGCAAGTTTCTTCCTCCTGGGTCGGAACCTTACCTTGCTCACTCCCTCTGGAACCCTGTTCCACCTCAACCACATGGTTTTCCACTTCCTCCTATACTTACTCTCCGCGTACTAACGTCTTATCCACGCGCTCTCATCCACGATCCTTCACCGCTCTCTCGTTTCTGGTCTCTCAAAGAAAAGGCTTCACGCTGACCTCGCTGGCACCGATCAGAAGGTCCAAGAAGAGAAGAAGAGCGTTGGGTGTTTCTGCTGTGTTCGAACGTTTCACGGAAAGAGCAATAAAAGCCATAGTCTTGTCGCAGAGGGAAGCCAAAGCGCTCGGAAGCGAATTGGTTTACACGCAACATCTCTTGCTGGGGCTCGTGGCTGAGGAGGATCGCTCCTCCGACGGTTTTCTCGCGTCTGGTATCACCGTCGAGAAGGCACGTGACGTTATTCGCAGTGTTTGGCATCGGAACAGTTCCGCACGTGGTGGGGTTGGTGATGATAACAAAACAAGTGCCACGCAGGTTCCCTTTTCCGTTAACGCGAAACGAGTCTTTGAGGCTGCGGTGGAGTATTCGAAGTCTTTGGGACACAAATTCGTTGCTCCGGAACACATTACTGTTGGTTTAGTAAAAGTGGATGATGGAAGTGTTAGTAGGGTCCTTTACAGATTGGGGACAAATGGAAACCAATTGGCAGCTGTGGCATTCTCCAGATTACAAAAGGAGATTGCTAAAGACGGTAGAGAACCTAATATGGCATCCAAGGGGATGCCCAACAAATCGCTTTCTAGAAAAGGTTCTGAAGCTGGAGCCTCTGGCACAACAGGAGAGGAGAGTCCTCTATCACAATTTTGTGTGGATCTCACTGCCCGTGCGAGTGAAGGACAAATTGATCCAGTTGTTGGCCGAGAAGTTGAAGTTCAAAGAATAGTTCAAATACTATGCAGGAAAACAAAAAGCAATCCCATTCTTCTTGGTGAAGCTGGGGTTGGAAAAACTGCTATTGCAGAGGGGCTGGCACTTCGGATTGCCAAGGCAGATGTTTCTCCCTTTTTATTGACAAAGCGTGTGATGTCCTTGGATATAGCCCTGTTAATGGCTGGAGCAAAAGAAAGAGGAGAGCTAGAGGAACGTGTTACAAAGTTGATAAAAGACGTAATAAAGTCAGGTGATGTCATTCTCTTCATTGATGAAGTTCATATACTTGTTCAGGCAGGAACAGTTGGGAGAGGAAATAAGGGATCTGGCCTTGACATTGCTAATTTACTTAAACCTGCACTTGGAAGGGGTCAATTTCAGTGTATTGCATCAACCACCATAGATGAATACAGACTTTACTTTGAAAAAGACACGGCGTTGGCTCGACGGTTTCAACCTGTTTGGGTTGATGAGCCGAGTGAGGATGACGCGATTAAGATCCTTACGGGCATACGTGAGAAATATGAAGCATATCATAAATGCAGATACACAACAGATGCTATAAAGGCTGCAGTTGATTTGTCCGCAAGATACATAGTTGATAGGTATCTACCTGATAAAGCTATTGACCTCATAGATGAAGCAGGAAGCAGAGCTCGTATTGTAGCCTTTAAGAAGAAAAAGGAACAAGAAACTGGCATTCTTTCTAAGTGCCCAGCTGATTACTGGCAAGAAATTAGAATGGTCAAGTCTATGCATGAAATGGAGAGCAAGCTTAAATATTATGGTGCTTCCAACATTGACGAAAACAATGAACTCATACTGGATTCATATTTATCTTCTACAACCATTGATGATGAACCAATAGTAGTCGGGCCAGAAGATATAGCAGCAGTTGCTTCCCTCTGGTCAGGAATTCCTGTGCAGAAGCTCACGGCTGATCAAAGAATTCTTCTGTTAGACCTTGATAATCAACTTCGTAAACGTGTGATTGGACAAGAGGAGGCTGTTGCTGCCATTTCTAGAGCTGTGAAGAGATCTCGGGTTGGCCTCAAGGATCCTGATAGACCAATAGCTACCATGTTATTCTGTGGTCCTACCGGGGTTGGGAAAACAGAACTTGCAAAATCTTTGGCTGCATGTTACTTTGGATCGGAGGCAGCCATGGTACGATTAGACATGAGTGAATACATGGAACGGCATACAGTGAGCAAATTGATTGGATCGCCCCCAGGTTATGTTGGTTATGGAGAGGGCGGCGTTTTAACAGAAGCTATTAGAAGAAAACCGTTTACTGTGTTATTGCTTGATGAAATAGAGAAAGCTCATCCAGATATATTCAACATTCTTCTTCAAATTTTGGAAGATGGTCAACTTACTGATTCTCAGGGTCGCAGGGTTTCATTTAAAAATGCATTGGTGGTAATGACTTCAAATGTGGGGTCTAGTGCAATTGCTAAGGGTCAACACAACTCCATAGGTTTCTTGATTCCTGATGATAAAACAACATCATACAATGGCTTGAAATCGATGGTAATTGAAGAACTAAGAACATATTTTCGTCCAGAATTGCTCAACAGGATAGATGAAGTGGTAGTGTTTCAACCCCTCGAGAAATCACAGTTACTGAAGATATTGGATTTGCTCCTTCAAGACATGAAGAAAAGGGTTTTGTCCCTAGGAATCCATGTTAAGGTGTCTGAAGCAGTGAAGAAGCTTGTGTGCCAGCAAGGCTATAACCCAACATATGGTGCTAGGCCTCTGAGAAGGGCCATTACATCACTAATAGAAGATCCATTGAGTGAGGCATTTCTTTTTGGAGAGTGCAAGCCAGGTGACACTGTCCTCATTGATTTGGATGCTAATGGTTACCCCTTTGTTACAAGTCAGCTTGATAAGATTGTCAACTTATCTGACTGA 2829 0.4422 MQVSSSWVGTLPCSLPLEPCSTSTTWFSTSSYTYSPRTNVLSTRSHPRSFTALSFLVSQRKGFTLTSLAPIRRSKKRRRALGVSAVFERFTERAIKAIVLSQREAKALGSELVYTQHLLLGLVAEEDRSSDGFLASGITVEKARDVIRSVWHRNSSARGGVGDDNKTSATQVPFSVNAKRVFEAAVEYSKSLGHKFVAPEHITVGLVKVDDGSVSRVLYRLGTNGNQLAAVAFSRLQKEIAKDGREPNMASKGMPNKSLSRKGSEAGASGTTGEESPLSQFCVDLTARASEGQIDPVVGREVEVQRIVQILCRKTKSNPILLGEAGVGKTAIAEGLALRIAKADVSPFLLTKRVMSLDIALLMAGAKERGELEERVTKLIKDVIKSGDVILFIDEVHILVQAGTVGRGNKGSGLDIANLLKPALGRGQFQCIASTTIDEYRLYFEKDTALARRFQPVWVDEPSEDDAIKILTGIREKYEAYHKCRYTTDAIKAAVDLSARYIVDRYLPDKAIDLIDEAGSRARIVAFKKKKEQETGILSKCPADYWQEIRMVKSMHEMESKLKYYGASNIDENNELILDSYLSSTTIDDEPIVVGPEDIAAVASLWSGIPVQKLTADQRILLLDLDNQLRKRVIGQEEAVAAISRAVKRSRVGLKDPDRPIATMLFCGPTGVGKTELAKSLAACYFGSEAAMVRLDMSEYMERHTVSKLIGSPPGYVGYGEGGVLTEAIRRKPFTVLLLDEIEKAHPDIFNILLQILEDGQLTDSQGRRVSFKNALVVMTSNVGSSAIAKGQHNSIGFLIPDDKTTSYNGLKSMVIEELRTYFRPELLNRIDEVVVFQPLEKSQLLKILDLLLQDMKKRVLSLGIHVKVSEAVKKLVCQQGYNPTYGARPLRRAITSLIEDPLSEAFLFGECKPGDTVLIDLDANGYPFVTSQLDKIVNLSD 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01918 942 Pfam Clp amino terminal domain, pathogenicity island component 185 229 IPR004176 -
Phco7g01918 942 Pfam Clp amino terminal domain, pathogenicity island component 102 149 IPR004176 -
Phco7g01918 942 Pfam C-terminal, D2-small domain, of ClpB protein 840 919 IPR019489 -
Phco7g01918 942 Gene3D - 268 463 IPR027417 -
Phco7g01918 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 534 IPR027417 -
Phco7g01918 942 CDD RecA-like_ClpB_Hsp104-like 622 837 - -
Phco7g01918 942 SUPERFAMILY Double Clp-N motif 88 232 IPR036628 -
Phco7g01918 942 ProSitePatterns Chaperonins clpA/B signature 2. 694 712 IPR028299 -
Phco7g01918 942 Gene3D - 465 561 IPR027417 -
Phco7g01918 942 Pfam AAA lid domain 463 551 IPR041546 -
Phco7g01918 942 Pfam AAA domain (Cdc48 subfamily) 659 834 IPR003959 GO:0005524|GO:0016887
Phco7g01918 942 MobiDBLite consensus disorder prediction 253 276 - -
Phco7g01918 942 SMART ClpB_D2_small_2 840 929 IPR019489 -
Phco7g01918 942 FunFam ATP-dependent Clp protease subunit 613 838 - -
Phco7g01918 942 MobiDBLite consensus disorder prediction 242 276 - -
Phco7g01918 942 Gene3D - 840 936 - -
Phco7g01918 942 PANTHER ATP-DEPENDENT CLP PROTEASE 91 925 - -
Phco7g01918 942 Gene3D - 89 246 IPR036628 -
Phco7g01918 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 924 IPR027417 -
Phco7g01918 942 ProSitePatterns Chaperonins clpA/B signature 1. 415 427 IPR018368 GO:0005524
Phco7g01918 942 CDD AAA 298 455 - -
Phco7g01918 942 Pfam ATPase family associated with various cellular activities (AAA) 320 427 IPR003959 GO:0005524|GO:0016887
Phco7g01918 942 ProSiteProfiles Clp repeat (R) domain profile. 87 239 IPR004176 -
Phco7g01918 942 Gene3D - 591 839 IPR027417 -
Phco7g01918 942 SMART AAA_5 660 841 IPR003593 GO:0016887
Phco7g01918 942 SMART AAA_5 315 464 IPR003593 GO:0016887
Phco7g01918 942 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 664 682 IPR001270 GO:0005524
Phco7g01918 942 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 709 727 IPR001270 GO:0005524
Phco7g01918 942 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 771 785 IPR001270 GO:0005524
Phco7g01918 942 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 738 756 IPR001270 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01918 Phco-Chr7 23337402 23345978 Dispersed/Transposed