Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1642 ATGGCATCAGCGGCGAGTGGCGCCACGGGATGGTACAGGGGAAGGGTGAAGGCTGTTCCTTCTGGCGATTGTTTGGTCATTGTGGCAATTTCCAGCACCAAACCTGGTCCTTTGCCTGAAAAGAGCATTACTCTATCTTCTTTGATGGCACCTAGACTGGCACGTAGAGATGGTGTGGACGAGCCATTTGCATGGGAAAGTAGGGAATTTCTGAGAAAGCTCTGCATTGGGAAGGAAGTGACCTTCAGAGTGGACTACAACGTGCCAGCCATAAATCGTGACTTCGGAACTGTTTTTCTCGGGGATAAAAATGTTGCTGTGTTGGTTGTTTCCCAAGGATGGGTTAAGATAAGGGAACAGGGGCAGCAGAAAGGTGAAGCAAGTCCATACTTGGCAGAATTGTTACGCCTGGAAGAACAAGCTAAACAAGATGGCCTTGGCCGGTGGAGCAAGGTTCCTGGTGCTGCTGAGGCATCAATCAGAAATCTACCACGTTCAGCCATTGGTGACCCTAGTAACTTGGATGCTATGGGTTTGTTAGCCGCAAACAAGGGATTGCCCATGGAAGCAATTGTTGAGCAGATTCGTGATGGCAGTACTCTCCGAATCTATTTGCTCCCACAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGTCCCCACAAATGGGGAGGAGAGCTGCACCTGAAAGTGTTGTTGAATCAGAATTGGCATCTGATGACACCAATGTAGATGTTTCTGGGGAACCTCGAGCTACACTTACATCAGCACAAAGACTTGCGGTTTCAACAGCTACTGAAGCTTCTGCTGATCCTTTTGCACATGATGCTAAATTTTTCACTGAGATGCGTGTATTGAATCGAGATGTTCGGATTGTCTTGGAAGGCGTTGACAAGTTCAGCAATTTAATTGGATCAGTGTATTATCCTGATGGTGAATCCGCAAAGGACCTGGCATTGGAACTTGTGGAGAATGGTTATGCAAAATATGTTGAATGGAGTGCAAACATGATGGAAGAAGAGGCAAAGCGAAAGCTGAAAACTGCGGAGCTACAGGCTAAGAAAAACAGATTAAGGATGTGGACAAACTATGTACCACCACCTTCCAATTCAAAGGCAATTCATAATCAGAATTTTTCTGGCAAGATTGTTGAGGTTGTGAGTGGAGATTGTGTTGTTGTTGCTGATGATTCCATTCCATATGGTAGTCCACTAGCAGAGAGACGAGTTAACCTTTCAAGTATCAGGTGTCCAAAAATGGGCAATCCTCGTCGGGATGAAAAACCAGCTCCTTATGCCCGTGAAGCAAAGGAGTTCTTGAGAACACGCCTCATTGGTCATCAAGTCAATGTTCAGATGGAATATTCTAGAAAGGTTTCTCCCACAGATGGATCTGTAGTTCCATCAGCAGCTGCTGATTCCAGAGTAATGGATTTTGGATCAGTCTTCTTATTGTCCACTGCAAAGGTTGACAATGGTGATGCTGTGTCATCTGCACCACCTTCTGGAAATCAGCAAAATGGGGTGAATGTCGCGGAATTGATAGTTGGTCGTGGTTTTGGAACTGTCATTAGACATCGTGACTTTGAAGAGAGATCTAACTATTATGATGCACTTCTTGCTGCTGAATCACGTGCTATTGTGGGAAGAAAAGGCATCCACTCTGCCAAGGATCCCCCAGTGATGCATATAACTGACTTGACCGTGGTAAACAAAAATGTAGTTAAGAAAGCCAAAGACTTTTGTCCTTTCCTGAAAAGAAGTAGAAGAGTTCCTGCTGTTGTGGAATACGTACTCAGTGGTCATCGTTTTAAAGTGCTGATTCCTAAAGAAACTTGCAGCATTGCTTTCGCTTTTTCTGGAGTCAGGTGTCCAGGTCGTGATGAACCATATTCTGATGAAGCAATTGCTTTGATGAGGAGAAAAATAATGCAAAGAGATGTTGAGATTGAGGTTGAAACTGTCGATAAAACTGGAACATTCTTGGGATCCTTATGGGAGTCGAGAATCAATGTAGCATCTACCCTGCTCGAAGCTGGTCTTGCAAAACTCCAAACATCCTTTGGCACTGATAGAATTCCTGATTTTCATCTTCTACAGCAAGCTGAACAATCTGCCAAGAGGCAGAACCTGAAAATATGGGAGAATTTTGTCGAAGGAGAGGAAGTATCCAATGGTGCAGTTGTTGAAAACAAACAGCAAGAAGTGCTTAAGGTAATTGTTACAGAAGTCTTGGGTGGTGGCAAATTCTATGTTCAGACAGTTGGAGATCAAAAGATCGCATCCATTCAACAACAGCTAGCTTCTTTGAATCTGAAGGATGCTCCTGTGATTGGTGCTTTCAATCCTAAGAAGGGCGACATAGTCCTTTGTTATTTTCTTGCTGACAAGTCTTGGTACCGGGCCATGGTTGTCAACACCCCTCGGGGACCAGTTCAGTCCCCCAGTGACATGTTTGAAGTATTTTACATTGACTATGGAAATCAAGAAGCAGTACCCTACAGTCAGCTACGCCCTGTTGATCCATCTGTGTCTGCTGCACCTGGCCTTGCTCAACTGTGCAGCCTTGCTTACATCAAGATTCCAAACTTGGAAGAGGATTTTGGGCAAGAAGCAGCTGAATATTTGAGTGAACTGACTTTAAACAGTGGAAAAGAGTTCAGGGCGAAGGTTGAGGAGAAAGACAGTTCGGGAGGAAAAGTTAGAGGGCAGGGAACTGGGACAATTCTTGGCGTAACTCTTGTTGCTGTGGATGCCGACATCAGTGTTAATGCTGCCATTCTACAGGAAGGGCTTGCTAGGACTGAAAAAAGAAATAGGTGGGACAGAAAAGAACGGCAGTCAGCTATTGATAATTTGGAGAATTTCCAGGAAGAAGCAAAGAGCAGCAGACGTGGCATATGGCAGTATGGAGACATTCAGTCAGACGAGGAAGACACTGCTCCTCCTCCTAGAAAGGGTGGTGGTCGGAGATGA 2979 0.4481 MASAASGATGWYRGRVKAVPSGDCLVIVAISSTKPGPLPEKSITLSSLMAPRLARRDGVDEPFAWESREFLRKLCIGKEVTFRVDYNVPAINRDFGTVFLGDKNVAVLVVSQGWVKIREQGQQKGEASPYLAELLRLEEQAKQDGLGRWSKVPGAAEASIRNLPRSAIGDPSNLDAMGLLAANKGLPMEAIVEQIRDGSTLRIYLLPQFQFVQVFVAGIQSPQMGRRAAPESVVESELASDDTNVDVSGEPRATLTSAQRLAVSTATEASADPFAHDAKFFTEMRVLNRDVRIVLEGVDKFSNLIGSVYYPDGESAKDLALELVENGYAKYVEWSANMMEEEAKRKLKTAELQAKKNRLRMWTNYVPPPSNSKAIHNQNFSGKIVEVVSGDCVVVADDSIPYGSPLAERRVNLSSIRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGHQVNVQMEYSRKVSPTDGSVVPSAAADSRVMDFGSVFLLSTAKVDNGDAVSSAPPSGNQQNGVNVAELIVGRGFGTVIRHRDFEERSNYYDALLAAESRAIVGRKGIHSAKDPPVMHITDLTVVNKNVVKKAKDFCPFLKRSRRVPAVVEYVLSGHRFKVLIPKETCSIAFAFSGVRCPGRDEPYSDEAIALMRRKIMQRDVEIEVETVDKTGTFLGSLWESRINVASTLLEAGLAKLQTSFGTDRIPDFHLLQQAEQSAKRQNLKIWENFVEGEEVSNGAVVENKQQEVLKVIVTEVLGGGKFYVQTVGDQKIASIQQQLASLNLKDAPVIGAFNPKKGDIVLCYFLADKSWYRAMVVNTPRGPVQSPSDMFEVFYIDYGNQEAVPYSQLRPVDPSVSAAPGLAQLCSLAYIKIPNLEEDFGQEAAEYLSELTLNSGKEFRAKVEEKDSSGGKVRGQGTGTILGVTLVAVDADISVNAAILQEGLARTEKRNRWDRKERQSAIDNLENFQEEAKSSRRGIWQYGDIQSDEEDTAPPPRKGGGRR* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1642 992 Gene3D - 376 565 IPR035437 -
Pvu9g1642 992 Gene3D - 10 155 IPR035437 -
Pvu9g1642 992 ProSiteProfiles Thermonuclease domain profile. 857 971 IPR016071 -
Pvu9g1642 992 ProSiteProfiles Thermonuclease domain profile. 186 364 IPR016071 -
Pvu9g1642 992 PANTHER EBNA2 BINDING PROTEIN P100 6 983 - -
Pvu9g1642 992 SUPERFAMILY Staphylococcal nuclease 375 561 IPR035437 -
Pvu9g1642 992 PANTHER RIBONUCLEASE TUDOR 1 6 983 - -
Pvu9g1642 992 Pfam Staphylococcal nuclease homologue 864 970 IPR016071 -
Pvu9g1642 992 Pfam Staphylococcal nuclease homologue 269 363 IPR016071 -
Pvu9g1642 992 Pfam Staphylococcal nuclease homologue 43 151 IPR016071 -
Pvu9g1642 992 Pfam Staphylococcal nuclease homologue 620 717 IPR016071 -
Pvu9g1642 992 Gene3D - 178 375 IPR035437 -
Pvu9g1642 992 SUPERFAMILY Staphylococcal nuclease 793 977 IPR035437 -
Pvu9g1642 992 CDD TUDOR 787 840 IPR002999 -
Pvu9g1642 992 Gene3D - 756 852 - -
Pvu9g1642 992 SUPERFAMILY Staphylococcal nuclease 185 369 IPR035437 -
Pvu9g1642 992 ProSiteProfiles Tudor domain profile. 783 848 IPR002999 -
Pvu9g1642 992 Pfam Tudor domain 735 858 IPR002999 -
Pvu9g1642 992 Coils Coil 338 360 - -
Pvu9g1642 992 Gene3D - 572 715 IPR035437 -
Pvu9g1642 992 ProSiteProfiles Thermonuclease domain profile. 590 717 IPR016071 -
Pvu9g1642 992 Gene3D - 740 972 IPR035437 -
Pvu9g1642 992 ProSiteProfiles Thermonuclease domain profile. 10 151 IPR016071 -
Pvu9g1642 992 MobiDBLite consensus disorder prediction 954 992 - -
Pvu9g1642 992 SUPERFAMILY Staphylococcal nuclease 9 151 IPR035437 -
Pvu9g1642 992 SUPERFAMILY Staphylococcal nuclease 584 717 IPR035437 -
Pvu9g1642 992 SMART TUDOR_7 782 846 IPR002999 -
Pvu9g1642 992 SMART SNASE_2 378 557 IPR016071 -
Pvu9g1642 992 SMART SNASE_2 186 364 IPR016071 -
Pvu9g1642 992 SMART SNASE_2 590 717 IPR016071 -
Pvu9g1642 992 SMART SNASE_2 10 151 IPR016071 -
Pvu9g1642 992 ProSiteProfiles Thermonuclease domain profile. 378 557 IPR016071 -
Pvu9g1642 992 PIRSF RISC-Tudor-SN 1 983 IPR016685 GO:0016442|GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1642 Pvu-Chr9 23054176 23060580 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1642 K15979 - gmx:100794481 1810.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2879 2 44400766 44407329 Pvu9g1642 9 23054176 23060580 PCT