Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02561 ATGATTAATTGCTGTGTCCTTCACCCGAAGATCAATACACCATCACCATCATCATGTTCATCCATGGCGGAACTCAAGCAGCACCACTCCCTTCTCATCCGCCTCGGCCTCTCCTCCGACAACCACGCCATCTCCCCACTCATCACCTTCTCCTCCCTCTCTCCACACGGCGATCTCCGCTACGCTGTCACCCTCTTTTCCACCCTCCCAAACCCTGACACCTTTCTCTTCAACACTCTTATCAGAGCCTTCTCCCTCTCCCAAACTCCCTCCATTTCCCTCCTCTTCTACTCTGACATGCTCCATCGCGCTCTCTCACCCAACAACTTCACCTTCCCCTCTCTCATCAAATCCTCATCACTCTCCGCTACAATTCACCATGGCAGACAGGTCCATGCCCATGTTCTCAAGTTTGGGTTTGGATCGGATGTTTATGCTCTCAATGCCTTAGCTCACATGTATGTTAGTTTTGGTTTGTTGGGTGATGCAAGGAAGGTGTTTGATAGAATGCCTGTGAGGAGTGTTGTGTCTTGGACTATTATGATTTCTGGGTATGCTCAATGGGGGCTTGTGGACGAGGCTCTCGCTGTATTCGAGCTCTTGCCACAGAAGAATTCTGTTGCTTGGAATGCTGTCATTGCGGCTTTCGTTGGCAGCAATCGGTTTCGAGAGGCTTTTGGTTTGTTTCATAGGATGAGGAAGGAGGAGGAGGTGGAGCTGGATATGTATGTAGCTGCTACCATGCTTTCTGCTTGTACTGGAGTTGGTGCTTTGGAGATGGGAGAGTGGATACATCGGTATGTTGTGAGGAGTGGGATTGATTTGGACTCGAAGCTCGCTACGACCATTATTGACATGTATTGCAAGTGTGGTTGTTTGGACAAGGCTTTCAAGGTGTTCGGTGGGTTGCAGCTGAAAGGCCTTTCTTCATGGAACTGCATGATTGGAGGGTTTGCAATGCATGGAAAAGGAAAAGATGCTATTAGGCTTTTTAGGGAGATGGAGAAAGAGATGGTTTCCCCTGACAGTGTTACCTTTGTCAATGTCCTGAGTGCTTGTGCTCATTCGGGGTTAGTTGAGGAAGGCCGCTATTACTTTCGTTACATGACAGAAGTTCATGGCATTGAGCCTGCAAAGGAGCATTATGGCTGCATGGTTGATTTGCTTGCCAGGGCTGGAAGGCTGGAGGAAGCAAGAAAGGTCACAGATGAGATGCCAATGAACCCTGATGCCGGTGCGTTAGGTGCACTTCTCGGAGCTTGTAAAATCCATGGAAACCTCGAGTTAGGAGAGGAAATAGGCAAGAGGGTGATTGAGCTAGAGCCTGGAAATAGTGGCCGTTATGTACTACTAGCTAACATATATGCTGATTGTGGTAAATGGCAAGAAGTTGCTAATGTGAGGAAAGTGATGAATGATAGAGGAGTGAAGAAGGTGCCCGGCTTTTCGATGATCGAAATGGAGGGTACTGTTAACGAATTTGTTGCAGGAGAAAGGACTCATCCTCTGGCTCAAGAAGTGTATGCCAAAGTTGGTGAGATATTGGAATCAATCAAGATGGTTGGTTATGTTCCGGAAAATGAAGGTGTGTTGCATGATCTTGCTGAGGAAGAAGGGGAGAGTCCCCTGTTCTATCATAGCGAAAAGCTTGCAATTGCTTATGGGTTGTTAAAAAATAAACCAGGAGAAACCTTGAGAATCACAAAGAATCTGAGGGTTTGTAAAGACTGCCACCAAGCATGTAAATTGATCTCAAAAGTTTATGAGTGTGATATAATTCTAAGGGACAGGAATCGTTTCCACCATTTTAGCAATGGGAGTTGTTCTTGTAATGACTACTGGTGA 1845 0.4667 MINCCVLHPKINTPSPSSCSSMAELKQHHSLLIRLGLSSDNHAISPLITFSSLSPHGDLRYAVTLFSTLPNPDTFLFNTLIRAFSLSQTPSISLLFYSDMLHRALSPNNFTFPSLIKSSSLSATIHHGRQVHAHVLKFGFGSDVYALNALAHMYVSFGLLGDARKVFDRMPVRSVVSWTIMISGYAQWGLVDEALAVFELLPQKNSVAWNAVIAAFVGSNRFREAFGLFHRMRKEEEVELDMYVAATMLSACTGVGALEMGEWIHRYVVRSGIDLDSKLATTIIDMYCKCGCLDKAFKVFGGLQLKGLSSWNCMIGGFAMHGKGKDAIRLFREMEKEMVSPDSVTFVNVLSACAHSGLVEEGRYYFRYMTEVHGIEPAKEHYGCMVDLLARAGRLEEARKVTDEMPMNPDAGALGALLGACKIHGNLELGEEIGKRVIELEPGNSGRYVLLANIYADCGKWQEVANVRKVMNDRGVKKVPGFSMIEMEGTVNEFVAGERTHPLAQEVYAKVGEILESIKMVGYVPENEGVLHDLAEEEGESPLFYHSEKLAIAYGLLKNKPGETLRITKNLRVCKDCHQACKLISKVYECDIILRDRNRFHHFSNGSCSCNDYW 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02561 614 Pfam E motif 424 486 IPR046848 -
Adu08g02561 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Adu08g02561 614 Gene3D Tetratricopeptide repeat domain 124 257 IPR011990 GO:0005515
Adu08g02561 614 Gene3D Tetratricopeptide repeat domain 258 358 IPR011990 GO:0005515
Adu08g02561 614 Gene3D Tetratricopeptide repeat domain 359 487 IPR011990 GO:0005515
Adu08g02561 614 PANTHER OS06G0231400 PROTEIN 15 588 - -
Adu08g02561 614 Gene3D Tetratricopeptide repeat domain 14 118 IPR011990 GO:0005515
Adu08g02561 614 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 15 588 - -
Adu08g02561 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Adu08g02561 614 Pfam PPR repeat 381 406 IPR002885 -
Adu08g02561 614 Pfam PPR repeat 281 307 IPR002885 -
Adu08g02561 614 Pfam PPR repeat 147 173 IPR002885 -
Adu08g02561 614 SUPERFAMILY TPR-like 148 464 IPR011990 GO:0005515
Adu08g02561 614 TIGRFAM PPR: pentatricopeptide repeat domain 207 235 IPR002885 -
Adu08g02561 614 TIGRFAM PPR: pentatricopeptide repeat domain 281 308 IPR002885 -
Adu08g02561 614 TIGRFAM PPR: pentatricopeptide repeat domain 176 201 IPR002885 -
Adu08g02561 614 TIGRFAM PPR: pentatricopeptide repeat domain 310 342 IPR002885 -
Adu08g02561 614 TIGRFAM PPR: pentatricopeptide repeat domain 382 405 IPR002885 -
Adu08g02561 614 Pfam DYW family of nucleic acid deaminases 522 614 IPR032867 GO:0008270
Adu08g02561 614 Pfam PPR repeat family 204 252 IPR002885 -
Adu08g02561 614 Pfam PPR repeat family 309 354 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02561 Adu-Chr8 41683841 41685767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02561 90 614 Glycoside Hydrolase AT3G49170 35.927 1.86e-121 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02561 - - lang:109362323 925.235