Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2518 ATGGCGAGCACCAAAGTTCAGAGGGTTATGACCCAGCCCATTAACTTGATTTTCAGGTTTCTTCAGAGCAAAGCACGCATTCAGATTTGGCTTTTTGAGCAAAAGGATTTGAGGATTGAAGGCCGAATCATTGGTTTTGATGAATACATGAATTTGGTTCTTGATGATGCTGAAGAAGTGAACATCAAGAAGAAAAGCAGAAAGACATTAGgGAGGATCCTTCTTAAAGGAGACAACATAACCTTAATGATGAACACGGGGAAATGA 267 0.397 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSRKTLGRILLKGDNITLMMNTGK 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2518 88 SUPERFAMILY Sm-like ribonucleoproteins 12 85 IPR010920 -
Ssu1g2518 88 Pfam LSM domain 20 83 IPR001163 -
Ssu1g2518 88 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN E 1 87 IPR027078 GO:0000398|GO:0005681
Ssu1g2518 88 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN E 1 87 - -
Ssu1g2518 88 Gene3D - 1 86 - -
Ssu1g2518 88 CDD Sm_E 7 85 IPR027078 GO:0000398|GO:0005681
Ssu1g2518 88 SMART Sm3 19 85 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2518 Ssu-Chr1 69399078 69400225 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2518 K11097 - gmx:100807929 173.711