Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2519 ATGAAGCTGTGcttgcttttgttgttgttgctcaCATTCACAGTGGCCTCATCTGGCAATGTCACCTACGACGGTCGTTCCCTCATCATCGATGGCCACCGCAAGCTTCTTATCTCTGCTTCCATTCATTACCCTCGAAGCGTTCCCGCGATGTGGCCTGGTCTTGTTCAAACAGCGAAGGAAGGAGGAGTAGATGTCATCGAAACCTATGTTTTCTGGAATGGCCATGAACTTTCTCCAGGCAATTATTACTTTGGAGGAAGGTTCGATCTGGTCAAGTTTGTGAAGACTGTTCAGCAGGCTGGGATGTACTTGATTCTTCGAATAGGCCCATTTGTAGCTGCAGAATGGAATTTTGGTGGTGTACCAGTATGGCTGCATTATGTTCCAGGCACGGTATTCCGGACTTACAATCAGCCTTTTATGTATCATATGCAGAAGTTTACAACATACATAGTGAACCTTATGAAACAAGAGAAGCTTTTTGCTTCACAAGGGGGTCCCATAATCTTAGCCCAGATAGAAAATGAATATGGAtactatgaaaatttttataaagaggGGGGTAAGAAATATGCCTTGTGGGCTGCAAAGATGGCTGTTTCTCAAAATACAGGTGTCCCTTGGATAATGTGCCAACAATGGGATGCTCCAGACCCTGTGATTGATACATGCAATTCATTCTACTGTGACCAATTTACACCTACTTCTCCTAATAGGCCCAAAATTTGGACTGAGAACTGGCCTGGATGGTTTAAAACTTTTGGGGGCAGAGATCCTCACAGGCCAGCAGAAGATGTTGCATTTTCTGTTGCTCGTTTCTTCCAGAAAGGTGGAAGTGTACATAATTACTACAtgTATCATGGTGGAACAAATTTTGGGCGCACAGCAGGAGGTCCATTCATTACTACAAGTTATGACTACGATGCCCCAATAGATGAGTATGGGTTACCTAGACTTCCAAAATGGGGACATCTTAAGGAACTTCATAGAGCTATCAAGTTATGTGAGCATGTATTGCTTAATGGTAAATCAGTTAATATCTCCCTTGGTCCTTCTGTGGAGGCTGACGTCTATACTGACTCATCAGGAGCATGTGCTGCCTTTATTTCTAATGttgatgataaaaatgataagaCAGTGGAATTTCGGAATGCATCATATCACTTGCCAGCTTGGTCAGTTAGCATTCTTCCTGATTGCAAGAATGTAGTGTTCAACACAGCAAAGGTTACTTCCCAGACAAATATAGTTGCAATGATTCCTGAGAGTTTGCAGCAATCAGATAAAGgtgtaaattcttttaaatgGGACATAGTGAAGGAGAAGCCAGGAATCTGGGGGAAGGCAGactttgtcaaaaatggttttGTCGATCTCATCAACACTACCAAAGATACCACTGACTACCTGTGGCATACAACAAGTATATTTGTTGGTGAAAATGAAGAGTTCTTAAAGAAGGGAAGCAAACCAGTTCTTCTAATAGAATCCAAGGGTCATGCTCTCCATGCTTTTGTGAATCAGGAATATCAAGGTACTGGAACTGGAAATGGTACACATTCACCATTCACTTTTAAGAATCCGATCTCCCTCAAGGCAGGGAAAAATGAAATTGCTCTGTTATGCTTGACTGTTGGCTTACAGaCAGCTGGACCATTTTATGACTTCATAGGGGCAGGACTAACGAGTGTGAAGATTAAGGGACCCAATAATGGGACAATAGACTTATCTTCTTATGCCTGGACTTACAAGATTGGAGTGCAAGGAGAACATCTAAGAATATACCAGGGAGATGGGTTGAATAATGTGAACTGGACATCTACTTCAGAACCACCAAAAATGCAGCCATTGACATGGTACAAGGCTATTGTGGATGCTCCACCTGGGGATGAACCAGTTGGATTGGATATGTTACACATGGGCAAAGGTCTAGCCTGGTTAAATGGAGAAGAAATAGGAAGATATTGGCCTAGGAAAAGTGAATTCAAGAGTGAAGACTGTGTTAAAGAATGTGATTACAGAGGCAAATTTAATCCTGACAAATGTGACACTGGTTGTGGAGAACCTACACAGAAATGGTACCATGTTCCACGATCTTGGTTCAAGCCATCTGGAaatattcttgttatttttgagGAGAAAGGTGGAGATCCAGAGAATATTAGGTTCGTGAGACGTAAAATATCTGGAACGTGTGCCCTTGTTGCTGAGGATTACCCCTCTGTTGGACTCCTTTCTCAGGGTCAAGATAATATACAGAATAACAAAAACATTCCTTTTGCCCGTTTGACGTGCCCCAGTAATACTCTTATATCTGCTGTGAAGTTTGCTAGCTTTGGAACCCCCTCTGGGTCATGTGGATCTTACCTGAAGGGAGATTGCCATGATCCCAATTCTAGCATAGTTATAGAGAAGGCGTGCCTAAACAAAAATGACTGTGTCATAAAATTAACTGAAGAGAATTTCAAAACCAACTTGTGTCCTGGTTTATCAAGGAAACTTGCAGTGGAAGCGGTCTGTAGTTGa 2529 0.4069 MKLCLLLLLLLTFTVASSGNVTYDGRSLIIDGHRKLLISASIHYPRSVPAMWPGLVQTAKEGGVDVIETYVFWNGHELSPGNYYFGGRFDLVKFVKTVQQAGMYLILRIGPFVAAEWNFGGVPVWLHYVPGTVFRTYNQPFMYHMQKFTTYIVNLMKQEKLFASQGGPIILAQIENEYGYYENFYKEGGKKYALWAAKMAVSQNTGVPWIMCQQWDAPDPVIDTCNSFYCDQFTPTSPNRPKIWTENWPGWFKTFGGRDPHRPAEDVAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLPRLPKWGHLKELHRAIKLCEHVLLNGKSVNISLGPSVEADVYTDSSGACAAFISNVDDKNDKTVEFRNASYHLPAWSVSILPDCKNVVFNTAKVTSQTNIVAMIPESLQQSDKGVNSFKWDIVKEKPGIWGKADFVKNGFVDLINTTKDTTDYLWHTTSIFVGENEEFLKKGSKPVLLIESKGHALHAFVNQEYQGTGTGNGTHSPFTFKNPISLKAGKNEIALLCLTVGLQTAGPFYDFIGAGLTSVKIKGPNNGTIDLSSYAWTYKIGVQGEHLRIYQGDGLNNVNWTSTSEPPKMQPLTWYKAIVDAPPGDEPVGLDMLHMGKGLAWLNGEEIGRYWPRKSEFKSEDCVKECDYRGKFNPDKCDTGCGEPTQKWYHVPRSWFKPSGNILVIFEEKGGDPENIRFVRRKISGTCALVAEDYPSVGLLSQGQDNIQNNKNIPFARLTCPSNTLISAVKFASFGTPSGSCGSYLKGDCHDPNSSIVIEKACLNKNDCVIKLTEENFKTNLCPGLSRKLAVEAVCS 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2519 842 Gene3D Glycosidases 18 336 - -
Ssu1g2519 842 SUPERFAMILY (Trans)glycosidases 20 337 IPR017853 -
Ssu1g2519 842 SUPERFAMILY Galactose-binding domain-like 582 733 IPR008979 -
Ssu1g2519 842 Gene3D - 591 733 - -
Ssu1g2519 842 PRINTS Glycosyl hydrolase family 35 signature 31 48 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 PRINTS Glycosyl hydrolase family 35 signature 107 126 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 PRINTS Glycosyl hydrolase family 35 signature 300 316 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 PRINTS Glycosyl hydrolase family 35 signature 643 659 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 PRINTS Glycosyl hydrolase family 35 signature 243 258 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 PRINTS Glycosyl hydrolase family 35 signature 280 295 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 PRINTS Glycosyl hydrolase family 35 signature 164 179 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 PRINTS Glycosyl hydrolase family 35 signature 616 630 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 PRINTS Glycosyl hydrolase family 35 signature 52 70 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 166 178 IPR019801 GO:0004553|GO:0005975
Ssu1g2519 842 Pfam Glycosyl hydrolases family 35 27 332 IPR031330 -
Ssu1g2519 842 ProSiteProfiles SUEL-type lectin domain profile. 760 842 IPR000922 GO:0030246
Ssu1g2519 842 PANTHER BETA-GALACTOSIDASE 10 13 834 - -
Ssu1g2519 842 Gene3D - 750 842 IPR043159 -
Ssu1g2519 842 PANTHER BETA-GALACTOSIDASE RELATED 13 834 IPR001944 GO:0004553|GO:0005975
Ssu1g2519 842 SUPERFAMILY Galactose-binding domain-like 395 546 IPR008979 -
Ssu1g2519 842 Pfam Beta-sandwich domain in beta galactosidase 340 411 IPR041392 -
Ssu1g2519 842 Pfam Galactose binding lectin domain 764 841 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2519 Ssu-Chr1 69462472 69474222 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2519 3 730 Glycoside Hydrolase AT5G63810 71.233 0.0 1128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2519 - - gmx:100815037 1700.26