Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03185 ATGGAAAAGTGGAAGGTTTTTGTGATGGTGATGATGGTGTCATTATTCACATTCACTGTTGGAGGAGAAGAAGATGGTGTTACATATGATGGAAGGTCTTTACTCATTCATGGCCAGAGGAAACTCCTCTTCTCTGGCTCTATTCATTATCCTCGAAGCACTCCGAAGATGTGGCCAGATTTGATAGGCAAAGCCAAAGAAGGAGGATTGGATGTTATTCAAACCTATGTGTTTTGGAATTTACACGAGCCTCAACCTGGACAGTATGATTTCAGTGGTAGATATGACTTGGTCAGATTCATAAAGGAAATCCAAGCTCAAGGCTTGTATGTTTGCCTCAGAATTGGACCTTTCATTGAGAGTGAATGGACATACGGGGGATTCCCATTTTGGTTACATGATGTGCCTGGAATTGTTTACCGAACGGACAATGAACCATTCAAGTTCTACATGCAAAATTTTACAACAAAAATAGTGAACATGATGAAAGCTGAGGGCTTATATGCTTCACAAGGAGGCCCAATTATATTGTCACAGATTGAAAACGAATATCAAAACGTGGAAAGGTCATTCGGTGTGGGAGGACCACAGTATGTTCAATGGGCTGCAAAAATGGCACTGAGCCTTGACACTGGTGTTCCATGGGTTATGTGCAAGCAAACTGATGCTCCTCATCCAGTGATCAATACATGTAATGGCATGAGATGTGGAGAAACCTTTCCAGGCCCAAACTCGCCCAACAAGCCCAAATTGTGGACCGAAGACTGGACTTCTTTTTATCAAGTGTATGGTGGGTTGCCATATATAAGATCTGCACAAGACATTGCATTTCACGTCACTCTTTTTATTGCAAGAAATGGAAGCTATGTCAACTATTATATGTACCATGGTGGAACTAACTTTGGGAGAACAGCCTCTGCTTATGTTATAACAGCATATTATGATCAAGCCCCTCTTGATGAATATGGTTTGTTGAGGCAACCTAAGTGGGGACATCTTAGGGAATTGCATGCTGCAATCAAGTCTTGCTCTTCAACTTTGTTGCAAGGAGTTCAAAGTAATTTCTCTTTAGGTAAATTGCAAGAGGGTTATGTTTTTGAAGAAGAAAATGAAGGATGTGTTGCATTCCTCATAAACAATGATGGAGTGAATAACACAAATGTCCAATTCCGCAACAAAACCTTTGAATTGCTACCTAAGTCAATTAGTATCTTACCAGATTGTCAAAATGTGACATTCAATACAGCAAATGTAAATACAACAAGCAACACAAGAATCTATTTTAACAGACAAAACTTCAGCTCAATAGATGATTGGGAGAAATTTGAAGATGTGATTCCAAATTTTGATGACACCACACTAAGATCAAACACTCTGCTTGAACAAATGAATACAACTAAAGACAAATCAGATTACCTTTGGTACACTACTAGGTTTGAATATAATTTATCTTGTAGCGAACCAACATTTGTTGTTGAGTCCAGGGCACATGTTGCTCATGCTTTTGTGAACACCACATACATAGGTGGAGCACATGGAAATCATGATGTGAATTCATTCAAATTAGAGCTCCCAGTTACAGTGCAGTTACAGTGA 1596 0.3935 MEKWKVFVMVMMVSLFTFTVGGEEDGVTYDGRSLLIHGQRKLLFSGSIHYPRSTPKMWPDLIGKAKEGGLDVIQTYVFWNLHEPQPGQYDFSGRYDLVRFIKEIQAQGLYVCLRIGPFIESEWTYGGFPFWLHDVPGIVYRTDNEPFKFYMQNFTTKIVNMMKAEGLYASQGGPIILSQIENEYQNVERSFGVGGPQYVQWAAKMALSLDTGVPWVMCKQTDAPHPVINTCNGMRCGETFPGPNSPNKPKLWTEDWTSFYQVYGGLPYIRSAQDIAFHVTLFIARNGSYVNYYMYHGGTNFGRTASAYVITAYYDQAPLDEYGLLRQPKWGHLRELHAAIKSCSSTLLQGVQSNFSLGKLQEGYVFEEENEGCVAFLINNDGVNNTNVQFRNKTFELLPKSISILPDCQNVTFNTANVNTTSNTRIYFNRQNFSSIDDWEKFEDVIPNFDDTTLRSNTLLEQMNTTKDKSDYLWYTTRFEYNLSCSEPTFVVESRAHVAHAFVNTTYIGGAHGNHDVNSFKLELPVTVQLQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03185 531 SUPERFAMILY (Trans)glycosidases 27 343 IPR017853 -
Aip08g03185 531 SUPERFAMILY Galactose-binding domain-like 402 517 IPR008979 -
Aip08g03185 531 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
Aip08g03185 531 Gene3D Glycosidases 24 344 - -
Aip08g03185 531 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Aip08g03185 531 PANTHER BETA-GALACTOSIDASE 6 23 529 - -
Aip08g03185 531 Pfam Glycosyl hydrolases family 35 33 339 IPR031330 -
Aip08g03185 531 PANTHER BETA-GALACTOSIDASE RELATED 23 529 IPR001944 GO:0004553|GO:0005975
Aip08g03185 531 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Aip08g03185 531 PRINTS Glycosyl hydrolase family 35 signature 170 185 IPR001944 GO:0004553|GO:0005975
Aip08g03185 531 PRINTS Glycosyl hydrolase family 35 signature 288 303 IPR001944 GO:0004553|GO:0005975
Aip08g03185 531 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Aip08g03185 531 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Aip08g03185 531 PRINTS Glycosyl hydrolase family 35 signature 113 132 IPR001944 GO:0004553|GO:0005975
Aip08g03185 531 PRINTS Glycosyl hydrolase family 35 signature 58 76 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03185 Aip-Chr8 122563017 122578667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03185 7 528 Glycoside Hydrolase AT5G63800 66.412 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03185 - - gmx:100818637 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03185 08 122563017 122578667 Aip08g03185 08 122563017 122578667 ECH
Aip03g03423 03 112030265 112035713 Aip08g03185 08 122563017 122578667 ECH