Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2188 ATGGAAAAGTGGATGGATTTTGTGATGGTGATGATGGTGTCATTATTGACATTCATTGTTGGAGAAGAAGATGGTGTTACATATGATGGAAGGTCTTTACTCATTCATGGCCAGAGGAAACTCCTCTTCTCTGGCTCTATTCATTATCCTCGAAGTACTCCGAAGATGTGGCCAGATTTGATAGGCAAAGCCAAAGAAGGAGGATTGGATGTTATTCAAACCTATGTGTTTTGGAATTTACACGAGCCTCAACCTGGACAGTATGATTTCAGTGGTAGATATGACTTGGTCAGATTCATAAAGGAAATCCAAGCTCAAGGCTTGTATGTTTGCCTCAGAATTGGACCTTTCATTGAGAGTGAATGGACATACGGGGGATTCCCATTTTGGTTACATGATGTGCCTGGAATTGTTTACCGAACAGACAATGAGCCATTCAAGTTCTACATGCAAAATTTTACAACAAAAATAGTGAACATGATGAAAGCTGAGGGCTTATATGCTTCACAAGGAGGCCCAATTATATTGTCACAGATTGAAAACGAATATCAAAACGTGGAAAGGTCATTCGGTGTGGGAGGACCACAGTATGTTCAATGGGCTGCAAAAATGGCACTGAGCCTTGACACTGGTGTTCCATGGGTTATGTGCAAGCAAACTGATGCTCCTGATCCAGTGATCAATACATGTAATGGCATGAGATGTGGAGAAACCTTTCCAGGCCCAAACTCGCCCAACAAGCCCAAATTGTGGACCGAAGACTGGACTTCTTTTTATCAAGTGTATGGTGGGTTGCCATATATAAGATCTGCACAAGACATTGCATTTCACGTCACTCTTTTTATTGCAAGAAATGGAAGCTATGTCAACTATTATATGTACCATGGTGGAACTAACTTTGGGAGAACAGCCTCTGCTTATGTTATAACAGCATATTATGATCAAGCCCCTCTTGATGAATATGGTTTGTTGAGGCAACCTAAGTGGGGACATCTTAGGGAATTGCATGCTGCAATCAAGTCTTGCTCTTCAACTTTGTTGCAAGGAGTTCAAAGTAATTTCTCTTTAGGTAAATTGCAAGAGGGTTATGTTTTTGAAGAAGAAAATGAAGGATGTGTTGCATTCCTCATAAACAATGATGGAGTGAATAACACAAATGTCCAATTCCGCAACAAAACCTTTGAATTGCTACCTAAGTCAATTAGTATCTTACCAGATTGTCAAAATGTGACATTCAATACAGCAAATGTAAATACAACAAGCAACACAAGAATCTATTTTAACAGACAAAACTTCAGCTCAATAGATGATTGGGAGAAATTTGAAGATGTGATTCCAAATTTTGATGACACCACACTAAGATCAAACACTCTGCTTGAACAAATGAATACAACTAAAGACAAATCAGATTACCTTTGGTACACTACTAGGTTTGAATATAATTTATCTTGTAGCGAACCAACATTTGTTGTTGAGTCCAGGGCACATGTTGCTCATGCTTTTGTGAACACCACATACATAGCTCCCAGTTACAGTGCAGTTACAGTGAATGAAGGGACAAACAACCTTTCTATCCTCAGTGTTATGGTTGGACTACCGGATTCAGGGGCATATCTGGAAAAAAGATTTGCTGGCTTAAGGAATGTGGAACTCCAATGTAGTAAACAAGAGTCACTTAGTTTGACCAATTCCACTTGGGGATATCAGGTTGGATTATTGGGAGAGAAATCACAAGTATATAGAGAACAAAATAGCAGTGATACTGAATGGACTCCACTGGAAAATATTACCACTCAGATGCTTGTTTGGTATAAGAGTACATTTGAAACACCAGAGGGTGATGACCCTGTTGCATTGGACCTAAGCTCAATGGGTAAAGGTGAAGTTTGGGTTAATGGAGAGAGCATTGGTCGCTATTGGATCTTATTCCATGATTCCAAAGGCAACCCTTCACAATCAATCTTGGTTTCTTTCTCTGTCTGCTTTGTTCATTCACATTTCTTGCTTTGGGTTCCAATGTCAGCTACGATGGTCGCTCCCTCATCATTGATGGCCAAAGGAAGCTTCTTCTCTCTGCTTCCATTCACTACCCCAGAAATGTGGCCAAGTCTTGTTCAAACAGCTAAGGAAGGAGGCATAGATGTCATAGAAACCTATGTTTTCTGGAACGGTCATGAGCTTTCTCCAGGAAATTATTACTTTGGAGGGCGATTCGATCTAGTCAAGTTTGTGAAGATTGTCCAGCAGGCTGGAATGTACTTGATTCTTCGGATAGGGCCGTTTGTTGCAGCGGAATGGAATTACGGTGGTGTACCGGTATGGTTGCATTATATTCCAGGCACGGTGTTCCGGACATACAATCAGCCTTTTATGTCTCATATGCAGAACTTTACAACATACATAGTAAATCTTATGAAACAAGAGAAGCTTTTTGCGTCGCAAGGGGAAAATGAGTACGGATACTATGAAAATTTTTATAAGGAGGACGGTAAGAAGTATGCAATGTGGGCTGCAAAGATGGCTGTTGCTCAGAATACCGGTGTCCCGTGGATAATGTGCCAGCAATGGGATGCTCCAGATCCTGTGATAGATACCTGTAACTCATTCTATTGTGACCAATTTAAACCTACTTCTCCAAATAGGCCAAAAATTTGGACCGAGAACTGGCCTGGATGGTTCAAAACTTTTGGTGGAAGAAATCCTCACCGGCCAGCTGAAGATGTGGCATATGCAGTTGCTCGTTTCTTCCAGAAAGGTGGAAGTGTGCAAAACTACTACATGTATCATGGAGGAACAAATTTCGGGCGTACAGCCGGTGGTCCATTCATTACTACAAGTTATGACTACGATGCCCCGATAGATGAGTACGGGTTACCTAGATTCCCGAAATGGGGACATCTTAAGGAGCTTCACAGAGCTATCAAGTTATGTGAGCCTGTATTGCTTAATGGCAAATCAGTTAATATCACCCTTGGTCCTTCTGTGGAGGCCGATGTCTATACCGATGAATCAGGAGCATGTGCTGCCTTTATTGCAAACATTGACGACAAAAATGATAGGACGGTGGAGTTTCGCAATATGTCATATCACCTGCCGGCGTGGTCGGTTAGCATCCTTCCTGATTGCAAGAATGTAGTCTTTAACACGGCAAAGGTTTCTACTCAGACACACGTAGTTTCGATGATTGATGAGAATTTGCAGCAATCAGATAAAGGTGCAGTGACTTTCAAATGGGATGTATTGAAGGAGAATGCAGGAATCTGGGGGGAGGCAGACTTCGTTAAAACCGGTTTTGTTGACCTTATAAATACCACCAAAGATACCACTGATTATCTGTGGCACACAACAAGTATATATGTTGGTGAAAATGAAGAGTTCCTAAAGAATGGAAGCAAACCAGTTCTTCTAATAAATTCCACTGGTCATGCTCTCCATGCATTTGTGAATCAGGAGTACCAAGGTACCGGAACTGGAAATGGTACACATTCGCCATTCTTTTTCAAGAATCCTATTCCTCTGAGGCCAGGGAAGAATGAGATTGCTTTATTATGCTTGACCGTTGGCTTACCGACTGCTGGACCATTTTACGACTTCGTCGGAGCAGGACTGATAAGTGTAAAGATTAAGGGATTCAACAATGGGACAGTAGACTTGTCTTCTAGTGCCTGGAGTTACAAGATCGGAGTACAAGGAGAACAACTGAAGTTATACCAGGGAGATGGGTCGAGTAGTTTGAAGTGGACAACCACATCCAAACCACCTAAAGGGCAGGCATTAACATGGTACAAGGCCGTCGTGGATGCTCCGTCCGGGGATGAACCAATTGGATTGGATATGTTGCATATGGGAAAGGGTCTAGCTTGGTTAAATGGAGAAGAAATTGGAAGATATTGGGCTCGGAATAGCGAGTTCGAGGAAAAAGACTGTGTACAAGAATGTGACTACAGAGGCAAATTCCTCCCTGACAAATGTTCACAAATCCAAGGGTCTTGGTTCAAGCCATCCGGGAACACTCTTGTTATTTTCGAGGAGAAAGGCGGAGATCCAACAAAGATTAAGTTCCTTAGGCGTAAAGTAACCGGAGCATGTGCCGATGTTGCCGAGGATTACCCTTCTATTGGACTTGATTCTCAGGGTGAAGATAAAATCAACAAGAACACTCCTTTTGCCCGTTTAACATGCCCCGGAAACACAATTATATCCTCAGTGAAATTTGCTAGCTTTGGAACCCCTACTGGAAAATGTGGATCTTACCTTTTGGGAAGTTGCCATGATCCCAATAGTAGCACAGTTGTTGAAAAGGCATGTCTAAACAAAAACGATTGCGTCGTAAAATTAGCCGAAGAGAATTTCAAGAACAATCTGTGTCCTGGTTCATCAAGGAAACTTGCACTTAGCTGCACAAAGAAGCAGAAGCAATTTTTCTTGGAAATATCCATTATTGTATTTTCTTAG 4455 0.4171 MEKWMDFVMVMMVSLLTFIVGEEDGVTYDGRSLLIHGQRKLLFSGSIHYPRSTPKMWPDLIGKAKEGGLDVIQTYVFWNLHEPQPGQYDFSGRYDLVRFIKEIQAQGLYVCLRIGPFIESEWTYGGFPFWLHDVPGIVYRTDNEPFKFYMQNFTTKIVNMMKAEGLYASQGGPIILSQIENEYQNVERSFGVGGPQYVQWAAKMALSLDTGVPWVMCKQTDAPDPVINTCNGMRCGETFPGPNSPNKPKLWTEDWTSFYQVYGGLPYIRSAQDIAFHVTLFIARNGSYVNYYMYHGGTNFGRTASAYVITAYYDQAPLDEYGLLRQPKWGHLRELHAAIKSCSSTLLQGVQSNFSLGKLQEGYVFEEENEGCVAFLINNDGVNNTNVQFRNKTFELLPKSISILPDCQNVTFNTANVNTTSNTRIYFNRQNFSSIDDWEKFEDVIPNFDDTTLRSNTLLEQMNTTKDKSDYLWYTTRFEYNLSCSEPTFVVESRAHVAHAFVNTTYIAPSYSAVTVNEGTNNLSILSVMVGLPDSGAYLEKRFAGLRNVELQCSKQESLSLTNSTWGYQVGLLGEKSQVYREQNSSDTEWTPLENITTQMLVWYKSTFETPEGDDPVALDLSSMGKGEVWVNGESIGRYWILFHDSKGNPSQSILVSFSVCFVHSHFLLWVPMSATMVAPSSLMAKGSFFSLLPFTTPEMWPSLVQTAKEGGIDVIETYVFWNGHELSPGNYYFGGRFDLVKFVKIVQQAGMYLILRIGPFVAAEWNYGGVPVWLHYIPGTVFRTYNQPFMSHMQNFTTYIVNLMKQEKLFASQGENEYGYYENFYKEDGKKYAMWAAKMAVAQNTGVPWIMCQQWDAPDPVIDTCNSFYCDQFKPTSPNRPKIWTENWPGWFKTFGGRNPHRPAEDVAYAVARFFQKGGSVQNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLPRFPKWGHLKELHRAIKLCEPVLLNGKSVNITLGPSVEADVYTDESGACAAFIANIDDKNDRTVEFRNMSYHLPAWSVSILPDCKNVVFNTAKVSTQTHVVSMIDENLQQSDKGAVTFKWDVLKENAGIWGEADFVKTGFVDLINTTKDTTDYLWHTTSIYVGENEEFLKNGSKPVLLINSTGHALHAFVNQEYQGTGTGNGTHSPFFFKNPIPLRPGKNEIALLCLTVGLPTAGPFYDFVGAGLISVKIKGFNNGTVDLSSSAWSYKIGVQGEQLKLYQGDGSSSLKWTTTSKPPKGQALTWYKAVVDAPSGDEPIGLDMLHMGKGLAWLNGEEIGRYWARNSEFEEKDCVQECDYRGKFLPDKCSQIQGSWFKPSGNTLVIFEEKGGDPTKIKFLRRKVTGACADVAEDYPSIGLDSQGEDKINKNTPFARLTCPGNTIISSVKFASFGTPTGKCGSYLLGSCHDPNSSTVVEKACLNKNDCVVKLAEENFKNNLCPGSSRKLALSCTKKQKQFFLEISIIVFS* 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2188 1484 SUPERFAMILY Galactose-binding domain-like 565 641 IPR008979 -
Amo08g2188 1484 Pfam Beta-sandwich domain in beta galactosidase 346 417 IPR041392 -
Amo08g2188 1484 Pfam Beta-sandwich domain in beta galactosidase 981 1052 IPR041392 -
Amo08g2188 1484 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Amo08g2188 1484 Gene3D - 1217 1366 - -
Amo08g2188 1484 ProSiteProfiles SUEL-type lectin domain profile. 1384 1466 IPR000922 GO:0030246
Amo08g2188 1484 Gene3D - 1377 1474 IPR043159 -
Amo08g2188 1484 Gene3D Glycosidases 23 343 - -
Amo08g2188 1484 PANTHER BETA-GALACTOSIDASE 10 695 1463 - -
Amo08g2188 1484 PANTHER BETA-GALACTOSIDASE 10 18 645 - -
Amo08g2188 1484 SUPERFAMILY (Trans)glycosidases 26 342 IPR017853 -
Amo08g2188 1484 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 PRINTS Glycosyl hydrolase family 35 signature 306 322 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 PRINTS Glycosyl hydrolase family 35 signature 599 613 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 PRINTS Glycosyl hydrolase family 35 signature 626 642 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 Pfam Galactose binding lectin domain 1392 1465 IPR000922 GO:0030246
Amo08g2188 1484 PANTHER BETA-GALACTOSIDASE RELATED 695 1463 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 PANTHER BETA-GALACTOSIDASE RELATED 18 645 IPR001944 GO:0004553|GO:0005975
Amo08g2188 1484 SUPERFAMILY Galactose-binding domain-like 401 552 IPR008979 -
Amo08g2188 1484 SUPERFAMILY Galactose-binding domain-like 1222 1378 IPR008979 -
Amo08g2188 1484 Gene3D - 534 664 - -
Amo08g2188 1484 SUPERFAMILY (Trans)glycosidases 695 978 IPR017853 -
Amo08g2188 1484 Gene3D Glycosidases 684 978 - -
Amo08g2188 1484 SUPERFAMILY Galactose-binding domain-like 1036 1197 IPR008979 -
Amo08g2188 1484 Pfam Glycosyl hydrolases family 35 697 973 IPR031330 -
Amo08g2188 1484 Pfam Glycosyl hydrolases family 35 32 338 IPR031330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2188 Amo-Chr8 34806922 34836972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2188 8 640 Glycoside Hydrolase AT5G63810 46.201 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2188 - - cqi:110735856 1997.25