Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0374 ATGCTGAGGCTTTGCATTTGTGGACCAATCAAAAGTGGATACTCTGATTTCATTTGGTTTTCAGGAAGACATTTCTCGGAAGGCATTGAGAGCATCGGTAAAATTTCAGAAGCAACTAATTGGATATTTAGCAATCCTGATGCTGCTAATTCATCAGATATGGATGCTACAACAAGCAGTACTCCTACTGCTGATGTTGGATTGCCTGATGGAGGAGGAAGATACCGACTTATTGGGCTAGTGAGCCACATTGGAACCTCAACCCAGTGTGGTCACTATGTTGCTCATATATACAAGGATGGAAGGTGGGTTATTTTCAACGATGACAAGGTTGGGGCTTCTATTAATCCCCCCAAGGATATGGGATATTTATATTTCTTTGAGAGACTGAGCAGTTGA 399 0.4185 MLRLCICGPIKSGYSDFIWFSGRHFSEGIESIGKISEATNWIFSNPDAANSSDMDATTSSTPTADVGLPDGGGRYRLIGLVSHIGTSTQCGHYVAHIYKDGRWVIFNDDKVGASINPPKDMGYLYFFERLSS* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0374 132 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 75 93 IPR018200 GO:0004843|GO:0006511
Vvi19g0374 132 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 130 IPR028889 -
Vvi19g0374 132 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 64 129 - -
Vvi19g0374 132 Gene3D Cysteine proteinases 36 131 - -
Vvi19g0374 132 SUPERFAMILY Cysteine proteinases 32 130 IPR038765 -
Vvi19g0374 132 Pfam Ubiquitin carboxyl-terminal hydrolase 61 127 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0374 Vvi-Chr19 4088830 4092360 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0374 K11836 - vvi:100264052 201.445