Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5688 ATGGATTTGCTCCGATCAAATCTTTCTCGTGTTCGAATTCCGGAGCCAACCAATCGCGTCTACAAGCAAGAGTGCTGCTTGTCTTTCGACACTCCTATTTCAGATGGTGGGTTATTCATCGACATGTTTACGTTTCTTGCTTTTGGAAAGGATTACGTTGGTTGGAACTTTGAAAAGACTGGAAATCCTGTTTACTTGCATGTAAAGAAGACTAAGAAGTTGGTTCCAGAAGATAGGCCTTCAAAGAAACCTACTCTCTTGGCTATTGGTGTTGATGGGGGATTTGATAACAATGATGCTGAATATGAAGAAACTCATAATATAGTTATATTACCTGACTATGTTTCTCTTTCATTTCCTTCTGTCGAATTGCCGGAGAAGGTAAGGTTGGCTGCTGATGCTATATTGCGAGATGCGGGTGCTGAACGGAAGGAGCAAGTTGCATCTTGGACTGCTGATCGGAAACTCGAAAGTGTCTATGCAATGAACTTACAGCAAATTGACAATAGTGTTGTTATTCCTCCATCTGGGTGGAAATGTTCCCAGTGTGACAAGACAGACAATCTTTGGTTAAATCTGACTGATGGAGTGATACTTTGTGGGAGGAAAAATTGGGATGGAAGTGGTGGTAACAACCATGCTGTTGAACATTATAAAAAGACTGGCTACCCACTTGCTGTAAAGCTTGGGACTATTACTGCTGATCTGGAAGCAGCAGATGTATTCTCCTATCCGGAGGATGAGAATGTGTTGGACCCACTTTTAGCGCAACATCTGGCATTTTTTGGGATTGATTTCTCATCACTGCAAAAGACTGAAATGACGACTGCTGAAAAAGAACTCGACCAAAATACCAATTTTGAATGGAATAGAATCCAAGAAAGTGGACAGGAAGTGGAACCAATTTTTGGACCTGGATTTACAGGATTGGTCAATCTTGGAAACAGTTGTTACCTGGCAGCAACTATGCAAGCTGTATTTTCATCACGATCTTTCTCTTCAAGGTACTATATAAACCAAAGTCTAAAGAAGGCATTTGAGGCGGCTCCTGCTGATCCAACTGTGGATCTCAATATGCAGTTGACGAAATTGGCACATGGTTTACTATCTGGCAAATATTCTGTTCCTCAATTTGAGAATGATGAGGACAAAAACGTTGCAATTGCAACCACTCCTACATCCGCGGTGCAGGAAGGGATACCACCACGTATGTTCAAAGCTTTAGTAGCTGCCAGCCATCCGGAATTTTCATCTATGAGACAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTTGACCAAGTGGAACGAGCTAATGCTGGGGAAACTGAACTCGATCCTGCAAGGAGTTTCAAGTTTGGTGTTGAAGATCGAATTTTGTGTTCATCCGGAAAAGTTGCATATAATAGAAGGAATGACTACATTCTTTCTCTGAATATCCCATTGCATGAAGCAACTAACAAAGAAGAGTTGGAATTGTTTCACAAACTGAAAGCAGAAAAGCTTTCTGAAGGAAAAGAAGTGTCTGGTGATGAGATTGTACGTCCAAGGGTGCCTTTAGAAGCTTGCCTAGCAAGCTTCTCATCTCCCGAGGAGATACATGATTTTTACAGCACTGCTTTGCAAGCGAAGACAACAGCGGTGAAATCGGCTGGTCTGACATCATTCCCTGATTACCTGGTGTTGCACATGCGGAAGTTTGTTATGGAAGAAGGATGGGTACCTAAAAAACTCGATGTATATGTCGATGTTCCTGATATCATAGATATCAGTCATATGCGTAGCAAAGGTCATCAACCTGGGGAAGAGCTTCTACCAGATGGGGTACCCACCGAGGATGATTCAGAAACACCTTTAGCCAATGAAGACATTGTTTCCCAACTGGTTTCTATGGGCTTTCACCTTATTCATTGTCAAAAAGCTGCTATAAATACATCAAATGCTGGAGTAGAAGAGGCAATGAATTGGTTACTATCTCACATGGATGATCCAGATATCGATGCTCCTATTTCTAAAGGGCGTGGCTCTGAAAGTATTGACCAGTCAAAAGTTGATACCCTAATATCATTTGGATTTCAAGACGACGTTGCTCGAAAGGCGCTGAAAGCGTCGGGTGGTGACATAGAGAAAGCAACAGACTGGATCTTTAGCAATCCCGATGCATCTGTTTCCAACATGGATGCTACTGCATCCAACACTACATCTGGTCCAAATGATGCTGACTTACCCGATGGAGGAGGAAAATATCGACTAATGGGAATTGTTAGCCACATTGGAACCTCAACGCATTGTGGTCACTATGTTGCTCACATCTTAAAAGACGGTAGATGGGTTATTTTTAACGACAACAAGGTAGGCGCTTCCATCAATCCTCCCAAGGACATGGGCTATCTTTACTTTTTTGAGAGGCTTAACTCTTGA 2421 0.4209 MDLLRSNLSRVRIPEPTNRVYKQECCLSFDTPISDGGLFIDMFTFLAFGKDYVGWNFEKTGNPVYLHVKKTKKLVPEDRPSKKPTLLAIGVDGGFDNNDAEYEETHNIVILPDYVSLSFPSVELPEKVRLAADAILRDAGAERKEQVASWTADRKLESVYAMNLQQIDNSVVIPPSGWKCSQCDKTDNLWLNLTDGVILCGRKNWDGSGGNNHAVEHYKKTGYPLAVKLGTITADLEAADVFSYPEDENVLDPLLAQHLAFFGIDFSSLQKTEMTTAEKELDQNTNFEWNRIQESGQEVEPIFGPGFTGLVNLGNSCYLAATMQAVFSSRSFSSRYYINQSLKKAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPQFENDEDKNVAIATTPTSAVQEGIPPRMFKALVAASHPEFSSMRQQDALEFFLHFLDQVERANAGETELDPARSFKFGVEDRILCSSGKVAYNRRNDYILSLNIPLHEATNKEELELFHKLKAEKLSEGKEVSGDEIVRPRVPLEACLASFSSPEEIHDFYSTALQAKTTAVKSAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYVDVPDIIDISHMRSKGHQPGEELLPDGVPTEDDSETPLANEDIVSQLVSMGFHLIHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISKGRGSESIDQSKVDTLISFGFQDDVARKALKASGGDIEKATDWIFSNPDASVSNMDATASNTTSGPNDADLPDGGGKYRLMGIVSHIGTSTHCGHYVAHILKDGRWVIFNDNKVGASINPPKDMGYLYFFERLNS* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5688 806 PIRSF UBP 3 805 IPR016652 GO:0004843|GO:0016579
Psa5g5688 806 SMART Zf_UBP_1 179 234 IPR001607 GO:0008270
Psa5g5688 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 109 IPR013083 -
Psa5g5688 806 CDD Peptidase_C19B 309 802 - -
Psa5g5688 806 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 806 - -
Psa5g5688 806 SUPERFAMILY UBA-like 674 720 IPR009060 GO:0005515
Psa5g5688 806 SUPERFAMILY Cysteine proteinases 304 804 IPR038765 -
Psa5g5688 806 Pfam Ubiquitin carboxyl-terminal hydrolase 308 801 IPR001394 GO:0004843|GO:0016579
Psa5g5688 806 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 308 804 IPR028889 -
Psa5g5688 806 ProSiteProfiles Zinc finger UBP-type profile. 156 266 IPR001607 GO:0008270
Psa5g5688 806 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 749 767 IPR018200 GO:0004843|GO:0006511
Psa5g5688 806 SUPERFAMILY RING/U-box 159 266 - -
Psa5g5688 806 Pfam Variant UBP zinc finger 11 73 IPR041432 -
Psa5g5688 806 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 678 718 IPR015940 -
Psa5g5688 806 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 619 660 IPR015940 -
Psa5g5688 806 Pfam UBA/TS-N domain 621 657 IPR015940 -
Psa5g5688 806 Pfam UBA/TS-N domain 679 715 IPR015940 -
Psa5g5688 806 Gene3D - 618 654 - -
Psa5g5688 806 SMART uba_6 680 717 IPR015940 -
Psa5g5688 806 SMART uba_6 621 659 IPR015940 -
Psa5g5688 806 Gene3D Cysteine proteinases 301 805 - -
Psa5g5688 806 Gene3D - 655 724 - -
Psa5g5688 806 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 309 324 IPR018200 GO:0004843|GO:0006511
Psa5g5688 806 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 806 - -
Psa5g5688 806 CDD UBA2_atUBP14 682 719 - -
Psa5g5688 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 253 IPR013083 -
Psa5g5688 806 Pfam Zn-finger in ubiquitin-hydrolases and other protein 180 253 IPR001607 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5688 K11836 - gmx:100805602 1362.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5688 5 493576395 493586527 Psa5g5688 5 493576395 493586527 ECH