Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2123 ATGACAATCGAACCCATGGATTTGCTCCGCTCCTATCTCTCCCGGGTTCGGATCCCCGAACCCACCAATCGCATCTACAAGCACGAATGCTGCATTTCCTTCGACTCTCCGAGGTCAGAAGGTGGTTTGTTCATTGACATGTGCACTTTTCTTGCTTTTGGGAAAGATTTTGTTGGTTGGAATTATGAGAAGACTGGAAATCCTGTCTATTTGCATATAAAGCAGACAAAGAAGTTAGTTCCAGAAGACAGGCCTTCAAAGAAACCTACTCTCTTGGCTATAGGTGTTGATGGGGGATTTGATAACAATGAGCCTGAATATGAGGAAACACATAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGAATTGCCAGAGAAGGTAAGGTTGGCAGTTGATGCAATCGTACTAGCTGAGGGTACTGAACGAAAGGAGCAACTTGCAGCTTGGACTGCTGATAAGAAAAAAGTTAGTTCCTATGCAACGAATTTACAACAGATTGACAATGGTGTTGTTATTCCGCCATCTGGGTGGAAATGTGCTAAATGTGACAAGGCAGACAATCTATGGCTAAACCTGACTGATGGAATGATTCTTTGTGAGAGGAAAAACTGGGATGGAACTGGTGGAAACAACCATGCTTTTGAGCATTACCAAGAGACAGGCTACCCTATTGCTGTAAAGCTTGGGACTATCACTGCTGATCTGGAAGCAGCAGATGTTTACTCTTATCCAGACGATGAAAGTGTCTTGGATCCACAATTAGCACAGCATCTGGCATTTTTTGGCCTTGACTTTTCATCACTACGAAAGACTGAAATGACAACTGCTGAAAGAGAACTTGATCACAATACAAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGTTGTTACATGGCAGCAACTATTCAAGTTGTGTTTTCAACAAGATCCTTCACATCACGGTACTATTTGAACCAAAGTCTAAAGAAGGCATTTGAGATGTCTCCTGCTGATCCCACTGTAGACCTAAATATGCAGCTAACAAAATTGGCTCACGGCATACTTTCTGGTAAATATTCTGTTCCGGCATTTGAGAATGACGAAAAAGAAAACGTTGCTACTTCAACTAGAACTGCTAAACAAGAAGGGATACGTCCACATATGTTTAAATCTGTAATAGCTGCCAGCCATCCTGAATTTTCATCTACGCAGCAACAGGATGCTTTAGAATTTTTCCTACATTTTCTTGATCAAGTTGAGCGAGCTAATACTGGGAAAACTGAACTGGATCCATCGAGGAGTTTCAAATTTGGTATTGAAGATAGAATTTTGTGTTCATCTGGAAAAGTTACATATAATAGAAGGAATGACTACATTCTTTCCCTCAATATCCCATTACATGAGGCAACTAATGAAGAAGAATTAGAATCCTTTCACAAACTGAAAGCAGAGAAACTTGCAGAAGGAAAGGAAATAAATGCCAATGAGATTGTGCGCCCAAGGGTACCTTTAGAAACTTGCCTTGTGAACTTCTCAGCTCCTGAGGAGATACAAGATTTTTACAGTACTGCTTTGAAGGCAAAGACAACAGCACTGAAGACTGCAGGTCTGACCTCATTTCCTGATTACCTGGTGTTACATATGCGGAGGTTTGTTATGGAGGCAGGACGGGAACCTAAAAAGCTTGATGTGCACATTGATGTTCCTGATATCATAGATATCAGTCACATGCGCAGCAAAGGTCAGCAGTCTGGGGAAGAGCTATTACCTGATGGTGTTCCTGGAGAGCAAGATTCTAACAAAATTTCGGCCAACGAAGAAATTGTTGCCCAGCTGGTTTCCATGGGCTTTAACCATCTCCATTGTCAGAAAGCTGCTATAAATACATCAAATGTTGGAGTAGAAGAGGCAATGAATTGGTTGTTATCTCACATGGATGATCCAGACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACCAATCAAAAGTTGATATTCTAATTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCGGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCATCAGTCTCCAGTATGGATGCTTCCCCATCAAACGCTGAATCCACTACCAATGATGTTAACCTACCTGATGGAGGAGGGAAATATCGACTTATGGGGATTTTGAGCCACAGTGGAACCTCTTTGCAGTGTGGTCACTATGTTGCTCACATTTTAAAAGATGGAAGATGGGCAATTTTCAACGACAACAAGGTCGGGGCATCCATTGATCCTCCAAAGGAAATGGGCTATCTTTATTTCTTCGAGAGGCTTTGA 2427 0.4129 MTIEPMDLLRSYLSRVRIPEPTNRIYKHECCISFDSPRSEGGLFIDMCTFLAFGKDFVGWNYEKTGNPVYLHIKQTKKLVPEDRPSKKPTLLAIGVDGGFDNNEPEYEETHSVVILPEYVSLPFPSVELPEKVRLAVDAIVLAEGTERKEQLAAWTADKKKVSSYATNLQQIDNGVVIPPSGWKCAKCDKADNLWLNLTDGMILCERKNWDGTGGNNHAFEHYQETGYPIAVKLGTITADLEAADVYSYPDDESVLDPQLAQHLAFFGLDFSSLRKTEMTTAERELDHNTNFDWNRIQESGQEVDPIFGPGYTGLVNIGNSCYMAATIQVVFSTRSFTSRYYLNQSLKKAFEMSPADPTVDLNMQLTKLAHGILSGKYSVPAFENDEKENVATSTRTAKQEGIRPHMFKSVIAASHPEFSSTQQQDALEFFLHFLDQVERANTGKTELDPSRSFKFGIEDRILCSSGKVTYNRRNDYILSLNIPLHEATNEEELESFHKLKAEKLAEGKEINANEIVRPRVPLETCLVNFSAPEEIQDFYSTALKAKTTALKTAGLTSFPDYLVLHMRRFVMEAGREPKKLDVHIDVPDIIDISHMRSKGQQSGEELLPDGVPGEQDSNKISANEEIVAQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDPDIDNPISKGHGSETIVDQSKVDILISFGFEEEIARNALKASGGDIEKATDWIFNNPDASVSSMDASPSNAESTTNDVNLPDGGGKYRLMGILSHSGTSLQCGHYVAHILKDGRWAIFNDNKVGASIDPPKEMGYLYFFERL* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2123 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 112 IPR013083 -
Gso6g2123 808 Gene3D - 622 657 - -
Gso6g2123 808 SUPERFAMILY Cysteine proteinases 309 807 IPR038765 -
Gso6g2123 808 CDD Peptidase_C19B 314 806 - -
Gso6g2123 808 Pfam Ubiquitin carboxyl-terminal hydrolase 313 805 IPR001394 GO:0004843|GO:0016579
Gso6g2123 808 Gene3D - 658 728 - -
Gso6g2123 808 SUPERFAMILY RING/U-box 163 271 - -
Gso6g2123 808 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 808 - -
Gso6g2123 808 ProSiteProfiles Zinc finger UBP-type profile. 161 271 IPR001607 GO:0008270
Gso6g2123 808 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 682 722 IPR015940 -
Gso6g2123 808 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 753 771 IPR018200 GO:0004843|GO:0006511
Gso6g2123 808 SMART Zf_UBP_1 184 239 IPR001607 GO:0008270
Gso6g2123 808 PIRSF UBP 7 808 IPR016652 GO:0004843|GO:0016579
Gso6g2123 808 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 313 808 IPR028889 -
Gso6g2123 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 258 IPR013083 -
Gso6g2123 808 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 314 329 IPR018200 GO:0004843|GO:0006511
Gso6g2123 808 CDD UBA1_atUBP14 624 668 - -
Gso6g2123 808 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 808 - -
Gso6g2123 808 Pfam Variant UBP zinc finger 16 78 IPR041432 -
Gso6g2123 808 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Gso6g2123 808 SUPERFAMILY UBA-like 678 724 IPR009060 GO:0005515
Gso6g2123 808 MobiDBLite consensus disorder prediction 727 746 - -
Gso6g2123 808 Pfam Zn-finger in ubiquitin-hydrolases and other protein 185 259 IPR001607 GO:0008270
Gso6g2123 808 Gene3D Cysteine proteinases 306 808 - -
Gso6g2123 808 SMART uba_6 624 662 IPR015940 -
Gso6g2123 808 SMART uba_6 684 721 IPR015940 -
Gso6g2123 808 Pfam UBA/TS-N domain 624 660 IPR015940 -
Gso6g2123 808 Pfam UBA/TS-N domain 684 719 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2123 Gso-Chr6 40232642 40241690 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2123 K11836 - gmx:100816664 1612.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2123 6 40232642 40241690 Gso6g2123 6 40232642 40241690 ECH