Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1075 ATGGTGACCAAGATATTCCTAAAGCCCCATCTCGTTGCCCTTACCCTTCCCTCAAAATTCGTGTTCCCTCACACTAACAAACCTTCCCTTACCCTTACCCTTTCCCTTCCCACCACTCTCCTCATCCCACACTTCTCCACTACCCCTCTCTCCTACGGACCCTCCCTCCACAAGGGAGCCACCCCCTTCCCATCCCAATCCCAATCCCAATCCCCATCCCCTTTAAACCAAAACGACGCCGTCCTCCGCGAAGAAGCCTTCACCCGAGTCTTCCACCTCGCCGCGCTCCGCGTCCCCTCCGCCGAATGCTCCGCCCTCGAGCGCCGCCTCCGCGGCCACCTCCTCAACTGGCCCCGCGTCCGCAACATCGCCCGCGTCCCCGGCGACGACGTCCACCCGGACCTCGCCCCTCTCCTGTCGCAACCAATTCACGGTAACGGCAACGGCGAAGAGGAAAAAACCATCGTCTCGTTACAACGCCGGATCCACGGCAGGGCGGACGGCGACGGCGACGTTTTGAGCCCCGTGCTGTACCGCGAGAGGCTCGCGAGGACGTTCAACTCTCGCGGGTTCGTGAAGTTCCGGAACCTGGCGAAGGTTTCGCGGCCGAACAGGAAtaagaagaggaggaagaggaaggaagagggTGATGGCGTTAAGCGCGTGGGGGAGAACGGTTTTGCCGCGGTTGAGGTTGTTGAGGAGGATGAAGAAGAAGGTGGTGGTTTGAGGAATTTGGTGGGGGAAGAGTTTGTTGCGAGGAGCAAGTGGAGGGGCTCGACGAGGTTACTGCTTCTGGACGAACGCCACGCGGCTTGCGGCGTGGAGGAGTTGCCTGAGGCAATTAAGGCTGTTTTGAAGGAGTATGCAGAAAAGAGTACAACTTTGACCCTTGAGCTAGTTAGATGCAAGTTGACACTATTCTATGATTACTGGCAGATGACTGAGGTCTTGGAGACCTTGCTGCCTGAGGGTATGATCATTCCTTCAGCTTTTGAGACTGTTGGTCATATAGCACACCTGAATTTGAGAGACGAACATTTACCATACAAGAGGCTAATAGCCaagGTTGTGCTGGATAAAAATAAGCCAAGGATACAAACAGTTGTGAACAAGATTGATTCCATTCAAAATGAGTACAGGACCATGCAGCTTGAGGTTTTAGCAGGAAACCACTCTCTTGTGACTACAGTAGTTGAGAACGGAATTCGCTTTCAGGTTGACTTAGCAACAGTATATTGGAGTTCTAGGCTTGGAACAGAAAGACAAAGGCTTCTGAGTGGTCTTACACGGAATGATGTTGTCTGTATGTGTCTACCTTCGCAAAAGAAGCCTACTTTTGTTATACTTCGACtttactttccttttcttttgattattgTCTTTCTAATAATGGAATTTAGCTGGTCAGAGCAATCTGATGGCAAATACCAATGA 1437 0.5052 MVTKIFLKPHLVALTLPSKFVFPHTNKPSLTLTLSLPTTLLIPHFSTTPLSYGPSLHKGATPFPSQSQSQSPSPLNQNDAVLREEAFTRVFHLAALRVPSAECSALERRLRGHLLNWPRVRNIARVPGDDVHPDLAPLLSQPIHGNGNGEEEKTIVSLQRRIHGRADGDGDVLSPVLYRERLARTFNSRGFVKFRNLAKVSRPNRNKKRRKRKEEGDGVKRVGENGFAAVEVVEEDEEEGGGLRNLVGEEFVARSKWRGSTRLLLLDERHAACGVEELPEAIKAVLKEYAEKSTTLTLELVRCKLTLFYDYWQMTEVLETLLPEGMIIPSAFETVGHIAHLNLRDEHLPYKRLIAKVVLDKNKPRIQTVVNKIDSIQNEYRTMQLEVLAGNHSLVTTVVENGIRFQVDLATVYWSSRLGTERQRLLSGLTRNDVVCMCLPSQKKPTFVILRLYFPFLLIIVFLIMEFSWSEQSDGKYQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1075 478 MobiDBLite consensus disorder prediction 56 77 - -
Ssu8g1075 478 PANTHER TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE 2 39 436 - -
Ssu8g1075 478 Gene3D Vaccinia Virus protein VP39 394 439 IPR029063 -
Ssu8g1075 478 Gene3D - 313 391 - -
Ssu8g1075 478 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 332 478 IPR030382 -
Ssu8g1075 478 PANTHER TRNA METHYLTRANSFERASE 39 436 - -
Ssu8g1075 478 Pfam Met-10+ like-protein 331 437 IPR030382 -
Ssu8g1075 478 Coils Coil 366 386 - -
Ssu8g1075 478 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 328 436 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1075 Ssu-Chr8 18908188 18912884 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1075 K15429 - gmx:100793959 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1075 8 18908188 18912884 Ssu8g1075 8 18908188 18912884 ECH