Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0063 ATGGCAATCGAATCCTTGGATTTGTTCCGTTCCAATCTCTCTCGAGTTCGGATTCCACAACCTACCAATCGCATCTTCAAGCACGAATGCTGCGTTTCTTTCGATACTCCGAGATCAGAAGGTGGTTTGTTCATCGACTTGTACACTTTCCTTGCTTTTGGGAAGGATTTTGTTGATTGGAATTATAAGAAGACAGGAAATCCTGTCTATTTGCATATAAAGCAGACAAAGAAGTTAATTTCAGAAGACAGACCATTAAAGAAGCCCACTATCTTGGCTATAGGTGTTGATGGTGGTTTTGATAACAATGAGCCTGAATATGAGGAAAATCATAGTATAGTCATATTACCTGAGTATGTGTCCCTTCCATTCCCCTCTGTGGAATTGCCAGAGAAGGTGAGGTTGGCAGTTGATACAATCTTGTTATCTGAGGGTGCCGAACGAAAGGAGCAACTTGCAGCTTGGACTGCTGATAAGAAACAAGTTAGTGCCTATGCGATGACTTTACAACAGATTGACAATGGTGTTGTTATTCCACCCAGAGGGTGGAAATGTGCTAAATGTGAGAAGACTGACAATCTTTGGCTAAATTTGACTGATGGAATGATTCTTTGTGGGAGGAAAAACTGGGATGGAAGTGGTGGAAACAACCATGCTATTGAGCATTACCAGAAAACAAGCTACCCCCTTGCTGTAAAGCTTGGGACTATCGCTGCAGATCTGGAAGCAGCAGATGTTTTCTCGTATCCAGAGGATGAAAGTGTCTTGGATCCACAATTAGCCCAGCATCTGGCATTTTTTGGCATTGACTTTTCATCACTACAAAAGACTGAAATGACAACTGCTGAAAGAGAACTTGATCAAAATACAAATTTTGATTGGAATCGGATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGTTGTTATATGGCTGCAACTATGCAAGTTGTGTTTTCAACAAGATCCTTCATATCACGGTACTACTTGAACCAAAGTCTAAAGAAGGCATTTGAGGTGTCTCCTGCCGATCCAACTGTAGACCTAAATATGCAGTTGACAAAATTGGCTCATGGTTTACTTTCTGGTAAATATTCTGTTCCGGCATTTGAGATCGATGAAAAAGAAGATGTTGCTACTTCAACTACAACTGCTAAACAAGAAGGGATACGCCCACGTATGTTCAAATCTGTAATTGCTGCCAGCCATCCTGAATTTTCCTCTACGCGACAACAGGATGCTTTAGAGTTTTTCCTGCATTTTCTTGAGCAAGTTGAACGAGCTCACGCTGGGAAAACTGAACTGGATCCATCGAGGAGTTTCAAGTTTGGTATTGAAGATAGAATTTTGTGTTCATCTGGAAAAGTTACATATAATAGAAGGCATGACTACATTCTTTCTCTCAATATCCCATTAAATGAAGCAACTAACCAAGAAGAATTAGAATCCTTTCACAAACTGAAAGCAGAGAAACTTGCAGAAGGAAAAGAAATAAATGGTGATGAGATTGTGCGTCCTAGGGTGCCTTTAGAAGCTTGCCTTACAAACTTCTCAGGTCCAGAGGAGATACATGACTTTTACAGTACTGCTTTGAAGGCAAAGACAACTGCACAGAAGACTGCAGGTCTGATCTCGTTTCCTGATTATCTGGTGTTACATATGCGGAGATTTGTTATGGAGACAGGATGGGTACCCAACAAGCTTGATGTGTATATTGATGTTCCTGATATCATAGACATCAGTCATATGCGCAGCAAAGGTCACCAGTCTGGAGAAGAGCTGTTACCAGATGGGGTATCTGATGAGGAGGATTCAAACAAAATTTTGCCCAATGAAGAAATTGTCTCACAGCTGGTTTCCATGGGCTTTAATCATCTGCATTGTCAGAAAGCTGCCATAAATACATCAAATGTTGGAGTGGAAGAGGCAATGAATTGGTTACTATCTCACATGGATGATCCAGATATTGACATTCCTATTTCCAAAGGCAATGGCTCTGAAACTTCAACTATTGTTGAACAATCGAAAGTTGACACCCTAATGTCGTTTGGATTTGAAGAAGAAATTGCTAGAAAGGCACTGAAGGCATCGGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCTTGATGCATCAGTCTCCAGTATGGATGGTGCCACGTCAAACGCTGCTTCCCCTCCCAGTGATGTTGACCTACCTGATGGTGGCGGGAGATATCGCCTTCTTGGTATTGTAAGCCACAGTGGAAGCTCTACGCAGTGTGGTCACTATGTTGCTCACGTTTTAAAAGATGGTAGATGGGTTATTTTCAACGACAACAAGGTTGGGGCTTCCATTAATCCTCCGAAGGAAATGGGCTATCTTTATTTCTTCGAGAGGCTTGATTAA 2436 0.413 MAIESLDLFRSNLSRVRIPQPTNRIFKHECCVSFDTPRSEGGLFIDLYTFLAFGKDFVDWNYKKTGNPVYLHIKQTKKLISEDRPLKKPTILAIGVDGGFDNNEPEYEENHSIVILPEYVSLPFPSVELPEKVRLAVDTILLSEGAERKEQLAAWTADKKQVSAYAMTLQQIDNGVVIPPRGWKCAKCEKTDNLWLNLTDGMILCGRKNWDGSGGNNHAIEHYQKTSYPLAVKLGTIAADLEAADVFSYPEDESVLDPQLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVDPIFGPGYTGLVNIGNSCYMAATMQVVFSTRSFISRYYLNQSLKKAFEVSPADPTVDLNMQLTKLAHGLLSGKYSVPAFEIDEKEDVATSTTTAKQEGIRPRMFKSVIAASHPEFSSTRQQDALEFFLHFLEQVERAHAGKTELDPSRSFKFGIEDRILCSSGKVTYNRRHDYILSLNIPLNEATNQEELESFHKLKAEKLAEGKEINGDEIVRPRVPLEACLTNFSGPEEIHDFYSTALKAKTTAQKTAGLISFPDYLVLHMRRFVMETGWVPNKLDVYIDVPDIIDISHMRSKGHQSGEELLPDGVSDEEDSNKILPNEEIVSQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDPDIDIPISKGNGSETSTIVEQSKVDTLMSFGFEEEIARKALKASGGDIEKATDWIFNNLDASVSSMDGATSNAASPPSDVDLPDGGGRYRLLGIVSHSGSSTQCGHYVAHVLKDGRWVIFNDNKVGASINPPKEMGYLYFFERLD* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0063 811 Pfam Ubiquitin carboxyl-terminal hydrolase 313 807 IPR001394 GO:0004843|GO:0016579
Apr5g0063 811 SUPERFAMILY UBA-like 648 727 IPR009060 GO:0005515
Apr5g0063 811 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 811 - -
Apr5g0063 811 SUPERFAMILY RING/U-box 163 271 - -
Apr5g0063 811 Pfam Zn-finger in ubiquitin-hydrolases and other protein 185 259 IPR001607 GO:0008270
Apr5g0063 811 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Apr5g0063 811 PIRSF UBP 8 811 IPR016652 GO:0004843|GO:0016579
Apr5g0063 811 SMART Zf_UBP_1 184 239 IPR001607 GO:0008270
Apr5g0063 811 Gene3D Cysteine proteinases 306 811 - -
Apr5g0063 811 SMART uba_6 624 662 IPR015940 -
Apr5g0063 811 SMART uba_6 686 723 IPR015940 -
Apr5g0063 811 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 684 724 IPR015940 -
Apr5g0063 811 Gene3D - 605 678 - -
Apr5g0063 811 ProSiteProfiles Zinc finger UBP-type profile. 161 271 IPR001607 GO:0008270
Apr5g0063 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 258 IPR013083 -
Apr5g0063 811 Pfam Variant UBP zinc finger 16 78 IPR041432 -
Apr5g0063 811 CDD Peptidase_C19B 314 808 - -
Apr5g0063 811 SUPERFAMILY Cysteine proteinases 309 811 IPR038765 -
Apr5g0063 811 CDD UBA1_atUBP14 624 668 - -
Apr5g0063 811 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 811 - -
Apr5g0063 811 Pfam UBA/TS-N domain 686 721 IPR015940 -
Apr5g0063 811 Pfam UBA/TS-N domain 623 660 IPR015940 -
Apr5g0063 811 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 314 329 IPR018200 GO:0004843|GO:0006511
Apr5g0063 811 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 313 810 IPR028889 -
Apr5g0063 811 CDD UBA2_atUBP14 688 724 - -
Apr5g0063 811 Gene3D - 679 740 - -
Apr5g0063 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 110 IPR013083 -
Apr5g0063 811 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 755 773 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0063 Apr-Chr5 593057 602241 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0063 K11836 - gmx:100805602 1441.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0063 5 593057 602241 Apr5g0063 5 593057 602241 ECH